U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    SMARCAL1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a like 1 [ Equus caballus (horse) ]

    Gene ID: 100050615, updated on 8-Mar-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    SMARCAL1provided by VGNC
    Official Full Name
    SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a like 1provided by VGNC
    Primary source
    VGNC:VGNC:23322
    See related
    Ensembl:ENSECAG00000007683
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Equus caballus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 6
    Exon count:
    21
    Annotation release Status Assembly Chr Location
    103 current EquCab3.0 (GCF_002863925.1) 6 NC_009149.3 (6172238..6225833)
    102 previous assembly EquCab2.0 (GCF_000002305.2) 6 NC_009149.2 (6401319..6454913)

    Chromosome 6 - NC_009149.3Genomic Context describing neighboring genes Neighboring gene membrane associated ring-CH-type finger 4 Neighboring gene uncharacterized LOC111773830 Neighboring gene tetratricopeptide repeat protein 23-like pseudogene Neighboring gene ribosomal protein L37a Neighboring gene insulin like growth factor binding protein 2

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP-dependent chromatin remodeler activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA repair IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in replication fork processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nuclear replication fork IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Equus caballus Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference EquCab3.0 Primary Assembly

    Genomic

    1. NC_009149.3 Reference EquCab3.0 Primary Assembly

      Range
      6172238..6225833
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005610591.3 → XP_005610648.1  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1

      See identical proteins and their annotated locations for XP_005610648.1

      UniProtKB/TrEMBL
      A0A9L0TTD1
      Related
      ENSECAP00000090303.1, ENSECAT00000118129.1
      Conserved Domains (5) summary
      COG0553
      Location:433 → 890
      HepA; Superfamily II DNA or RNA helicase, SNF2 family [Transcription, Replication, recombination and repair]
      cd00046
      Location:452 → 583
      DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
      pfam00271
      Location:713 → 823
      Helicase_C; Helicase conserved C-terminal domain
      pfam07443
      Location:254 → 307
      HARP; HepA-related protein (HARP)
      pfam15240
      Location:52 → 195
      Pro-rich; Proline-rich

    2. XM_005610592.3 → XP_005610649.1  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1

      See identical proteins and their annotated locations for XP_005610649.1

      UniProtKB/TrEMBL
      A0A9L0TTD1
      Conserved Domains (5) summary
      COG0553
      Location:433 → 890
      HepA; Superfamily II DNA or RNA helicase, SNF2 family [Transcription, Replication, recombination and repair]
      cd00046
      Location:452 → 583
      DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
      pfam00271
      Location:713 → 823
      Helicase_C; Helicase conserved C-terminal domain
      pfam07443
      Location:254 → 307
      HARP; HepA-related protein (HARP)
      pfam15240
      Location:52 → 195
      Pro-rich; Proline-rich

    3. XM_001490005.4 → XP_001490055.1  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1

      See identical proteins and their annotated locations for XP_001490055.1

      UniProtKB/TrEMBL
      A0A9L0TTD1
      Conserved Domains (5) summary
      COG0553
      Location:433 → 890
      HepA; Superfamily II DNA or RNA helicase, SNF2 family [Transcription, Replication, recombination and repair]
      cd00046
      Location:452 → 583
      DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
      pfam00271
      Location:713 → 823
      Helicase_C; Helicase conserved C-terminal domain
      pfam07443
      Location:254 → 307
      HARP; HepA-related protein (HARP)
      pfam15240
      Location:52 → 195
      Pro-rich; Proline-rich

    4. XM_014740277.2 → XP_014595763.1  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1

      UniProtKB/TrEMBL
      A0A9L0TTD1
      Related
      ENSECAP00000030515.3, ENSECAT00000045309.3
      Conserved Domains (5) summary
      COG0553
      Location:433 → 890
      HepA; Superfamily II DNA or RNA helicase, SNF2 family [Transcription, Replication, recombination and repair]
      cd00046
      Location:452 → 583
      DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
      pfam00271
      Location:713 → 823
      Helicase_C; Helicase conserved C-terminal domain
      pfam07443
      Location:254 → 307
      HARP; HepA-related protein (HARP)
      pfam15240
      Location:52 → 195
      Pro-rich; Proline-rich
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.