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    UBB ubiquitin B [ Equus caballus (horse) ]

    Gene ID: 100033924, updated on 8-Mar-2024

    Summary

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    Official Symbol
    UBBprovided by VGNC
    Official Full Name
    ubiquitin Bprovided by VGNC
    Primary source
    VGNC:VGNC:56507
    See related
    Ensembl:ENSECAG00000035031
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Equus caballus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
    Also known as
    UBC
    Annotation information
    Annotation category: partial on reference assembly
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 8
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    103 current EquCab3.0 (GCF_002863925.1) 11 NC_009154.3 (58214628..58216473, complement)
    102 previous assembly EquCab2.0 (GCF_000002305.2) 11 NC_009154.2 (57863106..57864723, complement)

    Chromosome 11 - NC_009154.3Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA SNORD49 Neighboring gene transient receptor potential cation channel subfamily V member 2 Neighboring gene uncharacterized LOC111775742 Neighboring gene uncharacterized LOC102149100 Neighboring gene centromere protein V

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein tag activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin protein ligase binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in modification-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ubiquitin C

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001081862.1 → NP_001075331.1  ubiquitin C

      See identical proteins and their annotated locations for NP_001075331.1

      Status: PROVISIONAL

      Source sequence(s)
      AF506969
      UniProtKB/Swiss-Prot
      Q8MKD1
      Related
      ENSECAP00000088934.1, ENSECAT00000091228.1
      Conserved Domains (2) summary
      cd01803
      Location:77 → 152
      Ubiquitin; Ubiquitin
      smart00213
      Location:1 → 72
      UBQ; Ubiquitin homologues

    RefSeqs of Annotated Genomes: Equus caballus Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference EquCab3.0 Primary Assembly

    Genomic

    1. NC_009154.3 Reference EquCab3.0 Primary Assembly

      Range
      58214628..58216473 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8MKD1.3 GenPept UniProtKB/Swiss-Prot:Q8MKD1

    Gene LinkOut

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