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LOC4347682 probable inactive purple acid phosphatase 29 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4347682, updated on 21-Dec-2023

Summary

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Gene symbol
LOC4347682
Gene description
probable inactive purple acid phosphatase 29
Locus tag
OSNPB_090533300
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
OJ1112_E07.8
Expression
Ubiquitous expression in roots before flowering (RPKM 30.9), flowers (RPKM 25.6) and 6 other tissues See more
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Genomic context

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Location:
chromosome: 9
Exon count:
4
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (20942478..20946295)

Chromosome 9 - NC_029264.1Genomic Context describing neighboring genes Neighboring gene pantothenate kinase 2-like Neighboring gene glucan endo-1,3-beta-glucosidase, acidic isoform Neighboring gene lon protease homolog 2, peroxisomal-like Neighboring gene probable serine/threonine-protein kinase PBL19 Neighboring gene putative HVA22-like protein g

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_029264.1 Chromosome 9 Reference IRGSP-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hydrolase activity, acting on ester bonds IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable inactive purple acid phosphatase 29
Names
Os09g0533300
P0515E01.27
PTS protein-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029264.1 Reference IRGSP-1.0 Primary Assembly

    Range
    20942478..20946295
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015756116.2 → XP_015611602.1  probable inactive purple acid phosphatase 29 isoform X3

    Conserved Domains (1) summary
    cd07383
    Location:51 → 332
    MPP_Dcr2; Saccharomyces cerevisiae DCR2 phosphatase and related proteins, metallophosphatase domain

  2. XM_015756114.2 → XP_015611600.1  probable inactive purple acid phosphatase 29 isoform X1

    Conserved Domains (2) summary
    cd07383
    Location:51 → 332
    MPP_Dcr2; Saccharomyces cerevisiae DCR2 phosphatase and related proteins, metallophosphatase domain
    pfam00149
    Location:52 → 308
    Metallophos; Calcineurin-like phosphoesterase

  3. XM_015756115.2 → XP_015611601.1  probable inactive purple acid phosphatase 29 isoform X2

    UniProtKB/TrEMBL
    Q0J033, Q69SH3
    Conserved Domains (1) summary
    cd07383
    Location:51 → 332
    MPP_Dcr2; Saccharomyces cerevisiae DCR2 phosphatase and related proteins, metallophosphatase domain
Nucleotide Protein
Heading Accession and Version

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