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LOC4346079 chitinase-like protein 1 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4346079, updated on 21-Dec-2023

Summary

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Gene symbol
LOC4346079
Gene description
chitinase-like protein 1
Locus tag
OSNPB_080522500
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
OJ1186_G01.3; OJ1081_B12.117
Expression
Ubiquitous expression in flowers (RPKM 67.5), milk grains (RPKM 49.8) and 6 other tissues See more
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Genomic context

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Location:
chromosome: 8
Exon count:
3
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (25975420..25977457, complement)

Chromosome 8 - NC_029263.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4346077 Neighboring gene putative L-ascorbate peroxidase 6 Neighboring gene chaperone protein dnaJ 10 Neighboring gene BTB/POZ and MATH domain-containing protein 1 Neighboring gene BTB/POZ and MATH domain-containing protein 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_029263.1 Chromosome 8 Reference IRGSP-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chitinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell wall macromolecule catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in chitin catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
chitinase-like protein 1
Names
Os08g0522500
putative chitinase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029263.1 Reference IRGSP-1.0 Primary Assembly

    Range
    25975420..25977457 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015795335.2 → XP_015650821.1  chitinase-like protein 1

    UniProtKB/TrEMBL
    A2YX68, A3BUY9, Q84QQ7
    Conserved Domains (1) summary
    cl00222
    Location:67 → 301
    Lyz-like; lysozyme-like domains
Nucleotide Protein
Heading Accession and Version

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