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LOC4345048 (DL)-glycerol-3-phosphatase 1, mitochondrial [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4345048, updated on 21-Dec-2023

Summary

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Gene symbol
LOC4345048
Gene description
(DL)-glycerol-3-phosphatase 1, mitochondrial
Locus tag
OSNPB_080243600
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in flower buds (RPKM 16.1), flowers (RPKM 14.0) and 6 other tissues See more
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Genomic context

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See LOC4345048 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
6
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (8767787..8771588, complement)

Chromosome 8 - NC_029263.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA R71 Neighboring gene NADPH--cytochrome P450 reductase Neighboring gene protein CHROMATIN REMODELING 35 Neighboring gene uncharacterized LOC4345049

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_029263.1 Chromosome 8 Reference IRGSP-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Functional isolation of novel nuclear proteins showing a variety of subnuclear localizations. Moriguchi K, et al. Plant Cell, 2005 Feb. PMID 15659629, Free PMC Article
  2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycerol-3-phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glycerol biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
(DL)-glycerol-3-phosphatase 1, mitochondrial
Names
OSJNBb0070J06.26
Os08g0243600
P0437G01.11
putative HAD-superfamily hydrolase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029263.1 Reference IRGSP-1.0 Primary Assembly

    Range
    8767787..8771588 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015792973.2 → XP_015648459.1  (DL)-glycerol-3-phosphatase 1, mitochondrial

    UniProtKB/TrEMBL
    Q0J704, Q7XXR4
    Conserved Domains (1) summary
    PLN02811
    Location:24 → 240
    PLN02811; hydrolase
Nucleotide Protein
Heading Accession and Version

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