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LOC4339932 multiple organellar RNA editing factor 2, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4339932, updated on 21-Dec-2023

Summary

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Gene symbol
LOC4339932
Gene description
multiple organellar RNA editing factor 2, chloroplastic
Locus tag
OSNPB_060116600
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in flower buds (RPKM 75.1), flowers (RPKM 51.8) and 6 other tissues See more
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Genomic context

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See LOC4339932 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
4
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (922214..925256)

Chromosome 6 - NC_029261.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4339930 Neighboring gene protein ENHANCED DISEASE RESISTANCE 2 Neighboring gene uncharacterized LOC107281409 Neighboring gene chaperone protein dnaJ GFA2, mitochondrial

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_029261.1 Chromosome 6 Reference IRGSP-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cytidine to uridine editing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mitochondrial mRNA modification IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
multiple organellar RNA editing factor 2, chloroplastic
Names
OSJNBa0019F11.29-1
OSJNBa0019F11.29-2
Os06g0116600
putative DAL1 protein
putative plastid protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029261.1 Reference IRGSP-1.0 Primary Assembly

    Range
    922214..925256
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015787732.2 → XP_015643218.1  multiple organellar RNA editing factor 2, chloroplastic

    UniProtKB/TrEMBL
    Q8H656
Nucleotide Protein
Heading Accession and Version

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