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LOC4333113 mitochondrial import inner membrane translocase subunit TIM17-1 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4333113, updated on 21-Dec-2023

Summary

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Gene symbol
LOC4333113
Gene description
mitochondrial import inner membrane translocase subunit TIM17-1
Locus tag
OSNPB_030415500
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Biased expression in flowers (RPKM 2.9), flower buds (RPKM 1.3) and 3 other tissues See more
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Genomic context

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Location:
chromosome: 3
Exon count:
3
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (17236501..17241081)

Chromosome 3 - NC_029258.1Genomic Context describing neighboring genes Neighboring gene PI-PLC X domain-containing protein At5g67130 Neighboring gene uncharacterized LOC107277202 Neighboring gene F-box/kelch-repeat protein At5g26960-like Neighboring gene uncharacterized LOC107280252 Neighboring gene COBRA-like protein 5 Neighboring gene COBRA-like protein 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_029258.1 Chromosome 3 Reference IRGSP-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein import into mitochondrial matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of TIM23 mitochondrial import inner membrane translocase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in mitochondrial inner membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
mitochondrial import inner membrane translocase subunit TIM17-1
Names
Os03g0415500

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029258.1 Reference IRGSP-1.0 Primary Assembly

    Range
    17236501..17241081
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026023757.1 → XP_025879542.1  mitochondrial import inner membrane translocase subunit TIM17-1 isoform X1

    UniProtKB/TrEMBL
    A2XHZ4
    Conserved Domains (1) summary
    cl02381
    Location:6 → 141
    Tim17; Tim17/Tim22/Tim23/Pmp24 family

  2. XM_015773917.2 → XP_015629403.1  mitochondrial import inner membrane translocase subunit TIM17-1 isoform X2

    UniProtKB/TrEMBL
    A2XHZ4, Q0DR59, Q10JL7
    Conserved Domains (1) summary
    cl02381
    Location:6 → 141
    Tim17; Tim17/Tim22/Tim23/Pmp24 family

  3. XM_015773919.2 → XP_015629405.1  mitochondrial import inner membrane translocase subunit TIM17-1 isoform X3

    UniProtKB/TrEMBL
    A2XHZ4, Q10JL6, Q75IW7
    Conserved Domains (1) summary
    cl02381
    Location:6 → 141
    Tim17; Tim17/Tim22/Tim23/Pmp24 family
Nucleotide Protein
Heading Accession and Version

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