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LOC4331590 chaperonin CPN60-1, mitochondrial [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4331590, updated on 21-Dec-2023

Summary

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Gene symbol
LOC4331590
Gene description
chaperonin CPN60-1, mitochondrial
Locus tag
OSNPB_030143400
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
chaperonin
Expression
Ubiquitous expression in flower buds (RPKM 25.3), leaves before flowering (RPKM 13.7) and 6 other tissues See more
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Genomic context

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Location:
chromosome: 3
Exon count:
18
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (2401052..2406760, complement)

Chromosome 3 - NC_029258.1Genomic Context describing neighboring genes Neighboring gene subtilisin-like protease SBT1.2 Neighboring gene cysteine--tRNA ligase CPS1, chloroplastic/mitochondrial Neighboring gene PHD finger protein ING1 Neighboring gene uncharacterized LOC4331592

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_029258.1 Chromosome 3 Reference IRGSP-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP-dependent protein folding chaperone IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein refolding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
chaperonin CPN60-1, mitochondrial
Names
Os03g0143400

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029258.1 Reference IRGSP-1.0 Primary Assembly

    Range
    2401052..2406760 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015776545.2 → XP_015632031.1  chaperonin CPN60-1, mitochondrial

    UniProtKB/TrEMBL
    A0A0P0XVN5, B8AMW6, B8BHB9, B9FB06, B9G648, Q10RW9, Q8H903
    Conserved Domains (1) summary
    cd03344
    Location:35 → 555
    GroEL; GroEL_like type I chaperonin. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found ...
Nucleotide Protein
Heading Accession and Version

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