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LOC4328118 glutamate--tRNA ligase, chloroplastic/mitochondrial [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4328118, updated on 21-Dec-2023

Summary

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Gene symbol
LOC4328118
Gene description
glutamate--tRNA ligase, chloroplastic/mitochondrial
Locus tag
OSNPB_020121000
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
OJ1020_C02.10
Expression
Ubiquitous expression in leaves before flowering (RPKM 32.8), roots after flowering (RPKM 20.4) and 6 other tissues See more
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Genomic context

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Location:
chromosome: 2
Exon count:
12
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (1090398..1095997, complement)

Chromosome 2 - NC_029257.1Genomic Context describing neighboring genes Neighboring gene rac-like GTP-binding protein 6 Neighboring gene bifunctional protein FolD 4, chloroplastic Neighboring gene glycine-rich protein 2 Neighboring gene U6 small nuclear RNA (adenine-(43)-N(6))-methyltransferase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_029257.1 Chromosome 2 Reference IRGSP-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. A Rice Glutamyl-tRNA Synthetase Modulates Early Anther Cell Division and Patterning. Yang X, et al. Plant Physiol, 2018 Jun. PMID 29720556, Free PMC Article
  2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables glutamate-tRNA ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables tRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glutamyl-tRNA aminoacylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glutamate--tRNA ligase, chloroplastic/mitochondrial
Names
OSJNBb0088N06.19
Os02g0121000
putative glutamate-tRNA ligase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029257.1 Reference IRGSP-1.0 Primary Assembly

    Range
    1090398..1095997 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015767357.2 → XP_015622843.1  glutamate--tRNA ligase, chloroplastic/mitochondrial

    UniProtKB/TrEMBL
    A0A0P0VE61, B8AGK7, B9F261, Q6YUS0
    Conserved Domains (1) summary
    PLN02627
    Location:1 → 540
    PLN02627; glutamyl-tRNA synthetase
Nucleotide Protein
Heading Accession and Version

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