RefSeqs maintained independently of Annotated Genomes
These reference sequences exist independently of genome builds. Explain
These reference sequences are curated
independently of the genome annotation cycle, so their versions may not match the RefSeq
versions in the current genome build. Identify version mismatches by comparing the
version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products
above.
mRNA and Protein(s)
-
NM_001222.2 → NP_001213.2 calcium/calmodulin-dependent protein kinase II gamma isoform 4
- Description
- Transcript Variant: This variant (4) lacks in-frame segments of the coding region, compared to variant 1. It encodes a shorter isoform (4), that is missing internal segments compared to isoform 1.
- Source sequence(s)
-
BC034044,L07043
- Consensus CDS
-
CCDS7336.1
- UniProtKB/TrEMBL
-
O00561
- UniProtKB/Swiss-Prot
-
Q13555
- UniProtKB/TrEMBL
-
Q5SWX4
- Conserved Domains (3) summary
-
- cd00180
Location:13 – 272
Blast Score: 775
- S_TKc; Serine/Threonine protein kinases, catalytic domain. Phosphotransferases of the serine or threonine-specific kinase subfamily. The enzymatic activity of these protein kinases is controlled by phosphorylation of specific residues in the activation...
- smart00220
Location:24 – 272
Blast Score: 798
- S_TKc; Serine/Threonine protein kinases, catalytic domain
- cl09109
Location:363 – 490
Blast Score: 567
- NTF2_like; Nuclear transport factor 2 (NTF2-like) superfamily. This family includes members of the NTF2 family, Delta-5-3-ketosteroid isomerases, Scytalone Dehydratases, and the beta subunit of Ring hydroxylating dioxygenases. This family is a classic example of...
-
NM_172169.1 → NP_751909.1 calcium/calmodulin-dependent protein kinase II gamma isoform 2
- Description
- Transcript Variant: This variant (2) has multiple coding region differences, compared to variant 1. This results in a shorter isoform (2), compared to isoform 1.
- Source sequence(s)
-
BC034044
- Consensus CDS
-
CCDS7337.1
- UniProtKB/Swiss-Prot
-
Q13555
- Conserved Domains (3) summary
-
- cd00180
Location:13 – 272
Blast Score: 773
- S_TKc; Serine/Threonine protein kinases, catalytic domain. Phosphotransferases of the serine or threonine-specific kinase subfamily. The enzymatic activity of these protein kinases is controlled by phosphorylation of specific residues in the activation...
- smart00220
Location:24 – 272
Blast Score: 795
- S_TKc; Serine/Threonine protein kinases, catalytic domain
- cl09109
Location:395 – 522
Blast Score: 565
- NTF2_like; Nuclear transport factor 2 (NTF2-like) superfamily. This family includes members of the NTF2 family, Delta-5-3-ketosteroid isomerases, Scytalone Dehydratases, and the beta subunit of Ring hydroxylating dioxygenases. This family is a classic example of...
-
NM_172170.3 → NP_751910.1 calcium/calmodulin-dependent protein kinase II gamma isoform 3
- Description
- Transcript Variant: This variant (3) lacks an in-frame segment of the coding region, compared to variant 1. It encodes a shorter isoform (3), that is missing an internal segment compared to isoform 1.
- Source sequence(s)
-
AC022400,AL596247,AL713896
-
NM_172171.1 → NP_751911.1 calcium/calmodulin-dependent protein kinase II gamma isoform 1
- Description
- Transcript Variant: This variant (1) represents the longest transcript, and encodes the longest isoform 1.
- Source sequence(s)
-
BC034044,U66063
- Consensus CDS
-
CCDS7338.1
- UniProtKB/TrEMBL
-
Q13280
- UniProtKB/Swiss-Prot
-
Q13555
- Conserved Domains (3) summary
-
- cd00180
Location:13 – 272
Blast Score: 789
- S_TKc; Serine/Threonine protein kinases, catalytic domain. Phosphotransferases of the serine or threonine-specific kinase subfamily. The enzymatic activity of these protein kinases is controlled by phosphorylation of specific residues in the activation...
- smart00220
Location:24 – 272
Blast Score: 811
- S_TKc; Serine/Threonine protein kinases, catalytic domain
- cl09109
Location:424 – 551
Blast Score: 573
- NTF2_like; Nuclear transport factor 2 (NTF2-like) superfamily. This family includes members of the NTF2 family, Delta-5-3-ketosteroid isomerases, Scytalone Dehydratases, and the beta subunit of Ring hydroxylating dioxygenases. This family is a classic example of...
-
NM_172173.1 → NP_751913.1 calcium/calmodulin-dependent protein kinase II gamma isoform 6
- Description
- Transcript Variant: This variant (6) lacks in-frame segments of the coding region, compared to variant 1. It encodes a shorter isoform (6), that is missing internal segments compared to isoform 1.
- Source sequence(s)
-
BC034044,U50360
- UniProtKB/Swiss-Prot
-
Q13555
- Conserved Domains (3) summary
-
- cd00180
Location:13 – 272
Blast Score: 777
- S_TKc; Serine/Threonine protein kinases, catalytic domain. Phosphotransferases of the serine or threonine-specific kinase subfamily. The enzymatic activity of these protein kinases is controlled by phosphorylation of specific residues in the activation...
- smart00220
Location:24 – 272
Blast Score: 800
- S_TKc; Serine/Threonine protein kinases, catalytic domain
- cl09109
Location:372 – 499
Blast Score: 568
- NTF2_like; Nuclear transport factor 2 (NTF2-like) superfamily. This family includes members of the NTF2 family, Delta-5-3-ketosteroid isomerases, Scytalone Dehydratases, and the beta subunit of Ring hydroxylating dioxygenases. This family is a classic example of...
RefSeqs of Annotated Genomes: Build 37.1
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as RefSeqs
for chromosomes and scaffolds (contigs) from both reference and alternate assemblies.
Model RNAs and proteins are also reported here.
Genome Reference Consortium Human Build 37 (GRCh37), Primary_Assembly
Genomic
-
NC_000010.10
- Range
- 75572258..75634342, complement
- Download
-
GenBank
FASTA
Sequence Viewer (Graphics)
-
NT_030059.13
- Range
- 26376722..26438806, complement
- Download
-
GenBank
FASTA
Sequence Viewer (Graphics)
Alternate assembly (Celera)
Genomic
-
AC_000053.1
- Range
- 68855428..68917527, complement
- Download
-
GenBank
FASTA
Sequence Viewer (Graphics)
-
NW_924796.1
- Range
- 23049671..23111770, complement
- Download
-
GenBank
FASTA
Sequence Viewer (Graphics)
Alternate assembly (HuRef)
Genomic
-
AC_000142.1
- Range
- 69567318..69629325
- Download
-
GenBank
FASTA
Sequence Viewer (Graphics)
-
NW_001837987.2
- Range
- 5826832..5888839
- Download
-
GenBank
FASTA
Sequence Viewer (Graphics)
Suppressed Reference Sequence(s)
The following Reference Sequences have been suppressed. Explain
These RefSeqs were suppressed for the cited
reason(s). Suppressed RefSeqs do not appear in BLAST databases, related sequence links,
or BLAST links (BLink), but may still be retrieved by clicking on their
accession.version below.
-
NM_172172.1: Suppressed sequence
- Description
- NM_172172.1: This RefSeq was permanently suppressed because it is a nonsense-mediated mRNA decay (NMD) candidate.