1: CALM1 calmodulin 1 (phosphorylase kinase, delta) [ Homo sapiens ]

GeneID: 801 updated 8-Nov-2009

[Top][Help]Summary

Official Symbol
CALM1provided by HGNC
Official Full Name
calmodulin 1 (phosphorylase kinase, delta)provided by HGNC
Primary Source
HGNC:1442
See related
Ensembl:ENSG00000198668; HPRD:00241; MIM:114180
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
CAMI; PHKD; DD132; CALML2; CALM1
Summary
This gene encodes a member of the EF-hand calcium-binding protein family. It is one of three genes which encode an identical calcium binding protein which is one of the four subunits of phosphorylase kinase. Two pseudogenes have been identified on chromosome 7 and X. Multiple transcript variants encoding different isoforms have been found for this gene.

[Top][Help]Genomic regions, transcripts, and products

(plus) Go to reference sequence detailsTry our new Sequence Viewer


[Top][Help]Genomic context

chromosome: 14; Location: 14q24-q31See CALM1 in MapViewer

[Top][Help]Bibliography

Related Articles in PubMed

GeneRIFs: Gene References Into Function What's a GeneRIF?

PubMed 1. The interaction of calmodulin and HSP70 Heat-Shock Proteins was found in the nucleus during the S phase and regulated cell-cycle progression and cell apoptosis.
PubMed 2. CaM co-immunoprecipitates with EGF-activated and non-activated receptors
PubMed 3. Data show that that the prototypical CaM target sequence skMLCK, a fragment from skeletal muscle myosin light chain kinase, binds to CaM in a highly cooperative way, while only a lower degree of interdomain binding cooperativity emerges for CaMKK.
PubMed 4. Data demonstrate that interaction between the antagonists and calmodulin (CaM) results in a differential inhibition of CaM-dependent proteins involved in Ca2+-signal regulation.
PubMed 5. This protein has been found differentially expressed in the temporal lobe from patients with schizophrenia.
PubMed 6. The present study suggests that the CALM1 core promoter polymorphism -16C/T is not a risk factor for knee osteoarthritis susceptibility in the Chinese Han population.
PubMed 7. The CALM1 core promoter genotype is not a risk factor for knee osteoartrithis (KOA) etiology in Greek Caucasians on its own, but associated with the Asporin (ASPN) D14 or D15 risk allele, it could influence KOA susceptibility.
PubMed 8. CaM was identified in the Fas-mediated death inducing signaling complex (DISC). The amount of CaM recruited into the DISC was increased after Fas-stimulation.
PubMed 9. CaM affect cell morphology and motility through binding to stress fibers and regulate f-actin polymerization.
PubMed 10. Observational study of gene-disease association and gene-gene interaction. (HuGE Navigator)
PubMed 11. Observational study of gene-disease association. (HuGE Navigator)
PubMed 12. analysis of conformational changes of calmodulin upon Ca2+ binding
PubMed 13. analysis of calcium/calmodulin binding to the pleckstrin homology domain of AKT1
PubMed 14. the majority of CaM nuclear entry occurs by facilitated mechanisms in all cell types examined, in part by a Ca2+-independent and in part by a Ca2+-dependent translocation mechanism
PubMed 15. calmodulin and calcium regulate the binding of filamin A to actin filaments
PubMed 16. The high-resolution structure of the Ca(2+)/CaM-Ca(V)1.2 IQ domain complex was reported.
PubMed 17. Microtubules have a role in stabilising the structure of the pericentriolar matrix, involving interaction with one or more proteins that are targets for binding of calmodulin
PubMed 18. Calmodulin is a phospholipase C-beta interacting protein
PubMed 19. Calmodulin mediates Ca2+ sensitivity of Nav1.2 and Nav1.5 sodium channels
PubMed 20. Ca(2+)-calmodulin assumes a novel conformation when it is part of a complex with the C-terminal tail of the Ca(V)1.2 alpha(1) subunit
PubMed 21. CaM has a role in Fas-mediated apoptosis
PubMed 22. It is suggested that calmodulin plays a significant role in cytokinesis including furrow formation and regression
PubMed 23. the calcium binding dynamics of free calmodulin and CaM that is bound to other target proteins are altered by PEP-19
PubMed 24. calmodulin has a role in melatonin inhibition of estrogen receptor alpha
PubMed 25. differential binding of calmodulin by RalA and RalB
PubMed 26. Ca2+/CaM has a role in regulating ubiquitination through direct interaction with TRE17
PubMed 27. CaM binds to the membrane-proximal EpoR cytoplasmic region and plays an essential role in activation of Jak2-mediated EpoR signaling
PubMed 28. calmodulin has a role in ATP- augmented von Willebrand factor-dependent shear-induced platelet aggregation
PubMed 29. the Ral-CaM complex defines a multifaceted regulatory mechanism for PLC-delta1 activation
PubMed 30. Calmodulin may be involved directly in SRY nuclear import during gonadal development, and disruption of SRY.
PubMed 31. analysis of calmodulin and its interactions with ligands by circular dichroism
PubMed 32. transcriptional level of CALM1 is associated with susceptibility for hip OA
PubMed 33. recruited CaM is used by the C terminus of AC8 to mediate Ca2+ stimulation
PubMed 34. calmodulin binds to a 35-aa segment in the C terminus of TRPV1, and disruption of the calmodulin-binding segment prevents TRPV1 desensitization
PubMed 35. Membrane trafficking at early steps of the basolateral endocytic pathway in HepG2 cells is regulated by an intricate interplay between calmodulin and PKC.

[Top][Help]HIV-1 protein interactions

Protein    Interaction
1. Envelope surface glycoprotein gp160, precursor The calmodulin-binding domains in HIV-1 gp160 are involved in Fas-mediated apoptosis PubMed
2. The carboxyl-terminal domains (residues 768-788 and 826-854) of HIV-1 gp160 bind to calmodulin (CaM) PubMed
3. Envelope transmembrane glycoprotein gp41 The carboxyl terminus (amino acid residues 768-788 and 828-855) of HIV-1 gp41 binds efficiently to purified calmodulin (CaM) and inhibits in vitro CaM-mediated stimulation of phosphodiesterase activity PubMed
4. The fusion between CD4+ human cells and cells stably expressing HIV-1 gp41 and gp120 is inhibited by calmodulin PubMed
5. Nef HIV-1 Nef-induced CCL-2/MCP-1 upregulation in astrocytes depends on the myristoylation moiety (residues 2-3) of Nef and requires functional calmodulin PubMed
6. Interaction of HIV-1 Nef with calmodulin has been shown by coimmunoprecipitation analyses with lysates from NIH3T3 cells expressing Nef; a myristoylated 20 amino-acid peptide of Nef binds to calmodulin with higher affinity than the nonmyristoylated form PubMed
7. HIV-1 Nef induces interleukin 10 expression through an interaction with the calcium/calmodulin-dependent phosphodiesterase signal transduction pathway PubMed
8. Fluorescence spectroscopy analyses indicate the myristoylated N-terminal eight amino acids of HIV-1 Nef directly interact with calcium bound calmodulin PubMed
9. matrix Calmodulin binds to both HIV-1 Gag and Matrix proteins through an extended calmodulin-binding domain in Matrix (amino acids 11-46) PubMed
10. retropepsin Calcium-depleted calmodulin can be cleaved at phe65-pro66 and met71-met72 by HIV-1 protease PubMed

Go to the HIV-1, Human Protein Interaction Database

[Top][Help]Interactions

Description ..........
  Product Interactant Other Gene Complex Source Pubs          
Calmodulin interacts with MT3.
  AAH11834.1           BIND    PubMed
Calmodulin interacts with MT7.
  AAH11834.1           BIND    PubMed
Calmodulin interacts with Tryptamine (MT4).
  AAH11834.1           BIND    PubMed
Calmodulin interacts with MT5.
  AAH11834.1           BIND    PubMed
Calmodulin interacts with BT1.
  AAH11834.1           BIND    PubMed
Calmodulin interacts with MT2.
  AAH11834.1           BIND    PubMed
Calmodulin interacts with BT2.
  AAH11834.1           BIND    PubMed
Calmodulin interacts with BN1.
  AAH11834.1           BIND    PubMed
Calmodulin interacts with BN2.
  AAH11834.1           BIND    PubMed
 
  Calmodulin 1   NP_751911.1   CAMK2G      HPRD    PubMed
 
  Calmodulin 1   NP_444253.1   MYLK      HPRD    PubMed
 
  Calmodulin 1   NP_002921.1   RIT2      HPRD    PubMed
Calmodulin interacts with PACPR.
  NP_008819.1   BAA04466.1   ADCYAP1R1      BIND    PubMed
 
  NP_008819.1   NP_054908.1   ADD1      HPRD    PubMed
 
  NP_008819.1   NP_001608.1   ADD2      HPRD    PubMed
 
  NP_008819.1   NP_005161.1   ASCL2      HPRD    PubMed
CALM1 (CaM) interacts with CABIN1. This interaction was modelled on a demonstrated interaction between CaM from an unspecified species and human CABIN1.
  NP_008819.1   NP_036427.1   CABIN1      BIND    PubMed
Calmodulin interacts with CALTR.
  NP_008819.1   AAA35640.1   CALCR      BIND    PubMed
 
  NP_008819.1   NP_149129.1   CALD1      HPRD    PubMed
 
  NP_008819.1   Cyclin D1   CCND1      HPRD    PubMed
 
  NP_008819.1   Calponin 1   CNN1      HPRD    PubMed
Calmodulin interacts with CRF1R.
  NP_008819.1   NP_004373.2   CRHR1      BIND    PubMed
 
  NP_008819.1   NP_003783.1   EDF1      HPRD    PubMed
EGFR interacts with calmodulin
  NP_008819.1   NP_005219.2   EGFR      BIND    PubMed
 
  NP_008819.1   NP_000116.1   ESR1      HPRD    PubMed
 
  NP_008819.1   NP_001428.1   ESR2      HPRD    PubMed
GAP-43 interacts with CaM.
  NP_008819.1   NP_002036.1   GAP43      BIND    PubMed
Calmodulin interacts with GLP1R.
  NP_008819.1   NP_002053.2   GLP1R      BIND    PubMed
Calmodulin interacts with GLP2R.
  NP_008819.1   NP_004237.1   GLP2R      BIND    PubMed
Grb7 interacts with CaM. This interaction was modeled on a demonstrated interaction between human Grb7 and CaM from rat and an unspecified species.
  NP_008819.1   NP_005301.1   GRB7      BIND    PubMed
 
  NP_008819.1   Rhodopsin kinase   GRK1      HPRD    PubMed
 
  NP_008819.1   BAA05892.1   GRM5      HPRD    PubMed
 
  NP_008819.1   NP_870989.1   GRM7      HPRD    PubMed
 
  NP_008819.1   HSP90A   HSP90AA1      HPRD    PubMed
 
  NP_008819.1   NP_006624.1   IQGAP2      HPRD    PubMed
 
  NP_008819.1   NP_067627.2   KCNN2      HPRD    PubMed
 
  NP_008819.1   NP_004509.2   KCNQ2      HPRD    PubMed
 
  NP_008819.1   NP_062816.2   KCNQ5      HPRD    PubMed
 
  NP_008819.1   Lysosomal trafficking regulator   LYST      HPRD    PubMed
 
  NP_008819.1   Microtubule associated protein tau   MAPT      HPRD    PubMed
 
  NP_008819.1   Myogenic factor 5   MYF5      HPRD    PubMed
 
  NP_008819.1   NP_002460.1   MYF6      HPRD    PubMed
 
  NP_008819.1   Myosin 9B   MYO9B      HPRD    PubMed
 
  NP_008819.1   NP_002469.2   MYOD1      HPRD    PubMed
 
  NP_008819.1   NP_002470.2   MYOG      HPRD    PubMed
 
  NP_008819.1   NP_002491.1   NEUROD1      HPRD    PubMed
 
  NP_008819.1   Opioid receptor mu 1   OPRM1      HPRD    PubMed
 
  NP_008819.1   NP_005010.2   PDE1A      HPRD    PubMed
 
  NP_008819.1   NP_006204.1   PHKG1      HPRD    PubMed
 
  NP_008819.1   NP_006231.2   PPEF1      HPRD    PubMed
 
  NP_008819.1   NP_006230.2   PPEF2      HPRD    PubMed
Calmodulin interacts with PTH2R.
  NP_008819.1   NP_005039.1   PTH2R      BIND    PubMed
 
  NP_008819.1   Ras associated protein Rab3B   RAB3B      HPRD    PubMed
 
  NP_008819.1   Ryanodine receptor 1   RYR1      HPRD    PubMed
Nav1.4 interacts with CaM. This interaction was modeled on a demonstrated interaction between rat Nav1.4 and human CaM.
  NP_008819.1   NP_000325.3   SCN4A      BIND    PubMed
Calmodulin interacts with SECRR.
  NP_008819.1   NP_002971.1   SCTR      BIND    PubMed
 
  NP_008819.1   Synuclein alpha   SNCA      HPRD    PubMed
 
  NP_008819.1   Syntrophin alpha 1   SNTA1      HPRD    PubMed
 
  NP_008819.1   NP_003191.1   TCF3      HPRD    PubMed
 
  NP_008819.1   NP_003190.1   TCF4      HPRD    PubMed
 
  NP_008819.1   Titin   TTN      HPRD    PubMed
Calmodulin interacts with VIP1R.
  NP_008819.1   NP_004615.2   VIPR1      BIND    PubMed
 
  NP_008819.1   14-3-3 epsilon   YWHAE      HPRD    PubMed
 
  NP_008819.1   EDF1        HPRD    PubMed
 
  NP_008819.1   G protein coupled receptor kinase 4        HPRD    PubMed
 
  NP_008819.1   KCNQ3        HPRD    PubMed
 
  NP_008819.1   KCNQ5        HPRD    PubMed
Calmodulin interacts with a complex containing htt and tTG. This interaction was modeled on a demonstrated interaction between bovine calmodulin and human htt-tTG complex.
  NP_008819.1           BIND    PubMed
Phenotypic Suppression
  BioGRID:107252   BioGRID:106631   ADD1      BioGRID    PubMed
Affinity Capture-Western; Reconstituted Complex
  BioGRID:107252   BioGRID:115445   AKAP9      BioGRID    PubMed
Affinity Capture-Western; Co-localization; Reconstituted Complex
  BioGRID:107252   BioGRID:106862   AR      BioGRID    PubMed
Reconstituted Complex
  BioGRID:107252   BioGRID:107268   CAMK2G      BioGRID    PubMed
Reconstituted Complex
  BioGRID:107252   BioGRID:107331   CCNA2      BioGRID    PubMed
Reconstituted Complex
  BioGRID:107252   BioGRID:107664   CNN1      BioGRID    PubMed
Reconstituted Complex
  BioGRID:107252   BioGRID:115794   DCTN2      BioGRID    PubMed
Reconstituted Complex
  BioGRID:107252   BioGRID:108431   EWSR1      BioGRID    PubMed
Reconstituted Complex
  BioGRID:107252   BioGRID:109126   GRK4      BioGRID    PubMed
Reconstituted Complex
  BioGRID:107252   BioGRID:109127   GRK5      BioGRID    PubMed
Reconstituted Complex
  BioGRID:107252   BioGRID:114353   IQGAP1      BioGRID    PubMed
Co-crystal Structure
  BioGRID:107252   BioGRID:109982   KCNN2      BioGRID    PubMed
Reconstituted Complex
  BioGRID:107252   BioGRID:110308   MAPT      BioGRID    PubMed
Reconstituted Complex
  BioGRID:107252   BioGRID:110722   MYLK      BioGRID    PubMed
Reconstituted Complex
  BioGRID:107252   BioGRID:110731   MYO7A      BioGRID    PubMed
Affinity Capture-Western
  BioGRID:107252   BioGRID:110734   MYO9B      BioGRID    PubMed
Reconstituted Complex
  BioGRID:107252   BioGRID:111033   OPRM1      BioGRID    PubMed
Reconstituted Complex
  BioGRID:107252   BioGRID:111146   PCNT      BioGRID    PubMed
Co-fractionation
  BioGRID:107252   BioGRID:111162   PDE1A      BioGRID    PubMed
Reconstituted Complex; Two-hybrid
  BioGRID:107252   BioGRID:111471   PPEF1      BioGRID    PubMed
Reconstituted Complex; Two-hybrid
  BioGRID:107252   BioGRID:111466   PPEF2      BioGRID    PubMed
Reconstituted Complex
  BioGRID:107252   BioGRID:111946   RIT2      BioGRID    PubMed
Far Western
  BioGRID:107252   BioGRID:112438   SLC9A1      BioGRID    PubMed
Reconstituted Complex
  BioGRID:107252   BioGRID:112506   SNCA      BioGRID    PubMed
Reconstituted Complex
  BioGRID:107252   BioGRID:112723   SYT1      BioGRID    PubMed
Reconstituted Complex
  BioGRID:107252   BioGRID:112791   TCF3      BioGRID    PubMed
Reconstituted Complex
  BioGRID:107252   BioGRID:112787   TCF4      BioGRID    PubMed
Affinity Capture-Western; Reconstituted Complex
  BioGRID:107252   BioGRID:113281   TRPV1      BioGRID    PubMed

[Top][Help]General gene information

Markers

G06214(e-PCR)
Links: UniSTS:24581
RH11243(e-PCR)
Links: UniSTS:24582
GDB:433805(e-PCR)
Links: UniSTS:157197
D14S98E(e-PCR)
Links: UniSTS:147484
RH11167(e-PCR)
Links: UniSTS:77599
WI-18834(e-PCR)
Links: UniSTS:36651
D14S642E(e-PCR)
Links: UniSTS:11318
D14S1231(e-PCR)
Links: UniSTS:69176
D14S89E(e-PCR)
Links: UniSTS:147526
G54145(e-PCR)
Links: UniSTS:109382
D14S901(e-PCR)
Links: UniSTS:42830
IB3608(e-PCR)
Links: UniSTS:53368
RH130082(e-PCR)
Links: UniSTS:213370
Calm1(e-PCR), detects polymorphism
Links: UniSTS:506762
D14S98E(e-PCR)
Links: UniSTS:58767
SSC3C06(e-PCR)
Links: UniSTS:253869
EST13B3(e-PCR)
Links: UniSTS:263093
D14S89E(e-PCR)
Links: UniSTS:17090
CALM1(e-PCR)
Links: UniSTS:506081
D14S89E(e-PCR)
Links: UniSTS:147442
SHGC-30527(e-PCR)
Links: UniSTS:33778
1928(e-PCR)
Links: UniSTS:47094
RH70561(e-PCR)
Links: UniSTS:72957

Genotypes

See CALM1 SNP Genotype Report
See CALM1 SNP Geneview Report
See CALM1 SNP Variation Viewer Report Variation View Link

Related pseudogene(s)

2 foundReview record(s) in Gene

Homology

Homologs of the CALM1 gene The CALM1 gene is conserved in chimpanzee, cow, mouse, chicken, zebrafish, A.thaliana, and rice.

Pathways

KEGG pathway: Alzheimer's disease
05010
KEGG pathway: Calcium signaling pathway
04020
KEGG pathway: Glioma
05214
KEGG pathway: GnRH signaling pathway
04912
KEGG pathway: Insulin signaling pathway
04910
KEGG pathway: Long-term potentiation
04720
KEGG pathway: Melanogenesis
04916
KEGG pathway: Neurotrophin signaling pathway
04722
KEGG pathway: Olfactory transduction
04740
KEGG pathway: Phosphatidylinositol signaling system
04070
KEGG pathway: Vascular smooth muscle contraction
04270

[Top][Help]General protein information

Preferred Names
calmodulin 1
Names
calmodulin 1
phosphorylase kinase, delta subunit
NP_008819.1
EC 2.7.11.19

[Top][Help]NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

Genomic

  1. NG_013338.1 RefSeqGene

    Range
    5000..16292
    Download
    GenBank FASTA Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001166106.1NP_001159578.1  calmodulin 1 isoform 2

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR and coding region compared to variant 1. This difference causes translation initiation at a downstream AUG and results in a protein (isoform 2) with a shorter N-terminus compared to isoform 1.
    Source sequence(s)
    AI651063,AL512791,BC007965
  2. NM_006888.4NP_008819.1  calmodulin 1 isoform 1

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer protein (isoform 1).
    Source sequence(s)
    AI651063,AL512791,AU122722,BC011834
    Consensus CDS
    CCDS9892.1
    UniProtKB/TrEMBL
    B4DJ51
    UniProtKB/Swiss-Prot
    P62158
    Conserved Domains (2) summary
    cd00051
    Location:85147
    Blast Score: 178
    EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading...
    PTZ00184
    Location:1149
    Blast Score: 634
    PTZ00184; calmodulin; Provisional

RefSeqs of Annotated Genomes: Build 37.1

The following sections contain reference sequences that belong to a specific genome build. Explain

Genome Reference Consortium Human Build 37 (GRCh37), Primary_Assembly

Genomic

  1. NC_000014.8

    Range
    90863372..90874609
    Download
    GenBank FASTA Sequence Viewer (Graphics)
  2. NT_026437.12 

    Range
    71863372..71874609
    Download
    GenBank FASTA Sequence Viewer (Graphics)

Alternate assembly (Celera)

Genomic

  1. AC_000057.1

    Range
    70910522..70921757
    Download
    GenBank FASTA Sequence Viewer (Graphics)
  2. NW_925561.1 

    Range
    37665052..37676287
    Download
    GenBank FASTA Sequence Viewer (Graphics)

Alternate assembly (HuRef)

Genomic

  1. AC_000146.1

    Range
    71038199..71049434, complement
    Download
    GenBank FASTA Sequence Viewer (Graphics)
  2. NW_001838113.2 

    Range
    4859107..4870342, complement
    Download
    GenBank FASTA Sequence Viewer (Graphics)

[Top][Help]Related Sequences

  Nucleotide   Protein
  genomic   AC006536.2   AAD45181.1
  genomic   AL512791.3  (64110..75135)   None
  genomic   CH471061.1   EAW81427.1
       EAW81428.1
  genomic   U12022.1   AAB60644.1
  mRNA   AI651063.1   None
  mRNA   AK289937.1   BAF82626.1
  mRNA   AU122722.1   None
  mRNA   AY189287.1   AAO86731.1
  mRNA   BC000454.2   AAH00454.1
  mRNA   BC007965.2   AAH07965.1
  mRNA   BC008597.1   AAH08597.1
  mRNA   BC011834.2   AAH11834.1
  mRNA   BC042831.1   None
  mRNA   BC047523.1   None
  mRNA   BT006818.1   AAP35464.1
  mRNA   BX479707.1   None
  mRNA   BX482177.1   None
  mRNA   BX537677.1   None
  mRNA   BX648223.1   None
  mRNA   CR590380.1   None
  mRNA   CR591035.1   None
  mRNA   CR592381.1   None
  mRNA   CR595745.1   None
  mRNA   CR604747.1   None
  mRNA   CR611512.1   None
  mRNA   CR618763.1   None
  mRNA   CR619428.1   None
  mRNA   CR626701.1   None
  mRNA   M27319.1   AAA35635.1
  mRNA   U16850.1   None
Protein Accession   Links
P62158.2   GenPept   UniProtKB/Swiss-Prot:P62158
Q96HY3   GenPept   UniProtKB/TrEMBL:Q96HY3

[Top][Help]Additional Links