1: ARAF v-raf murine sarcoma 3611 viral oncogene homolog [ Homo sapiens ]

GeneID: 369 updated 8-Nov-2009

[Top][Help]Summary

Official Symbol
ARAFprovided by HGNC
Official Full Name
v-raf murine sarcoma 3611 viral oncogene homologprovided by HGNC
Primary Source
HGNC:646
Locus Tag
RP1-230G1.1
See related
Ensembl:ENSG00000078061; HPRD:02405; MIM:311010
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
PKS2; A-RAF; ARAF1; RAFA1; ARAF

[Top][Help]Genomic regions, transcripts, and products

(plus) Go to reference sequence detailsTry our new Sequence Viewer


[Top][Help]Genomic context

chromosome: X; Location: Xp11.4-p11.2See ARAF in MapViewer

[Top][Help]Bibliography

Related Articles in PubMed

GeneRIFs: Gene References Into Function What's a GeneRIF?

PubMed 1. Positive regulation of A-RAF by phosphorylation of isoform-specific hinge segment and identification of novel phosphorylation sites.
PubMed 2. A-Raf kinase is negatively regulated by trihydrophobin 1
PubMed 3. In a two-hybrid screen of human fetal liver cDNA library, TH1 was detected as a new interaction partner of A-Raf; this specific interaction may have played a critical role in the activation of A-Raf.
PubMed 4. mutation analysis of the conserved regions in the ARAF gene in human colorectal adenocarcinoma
PubMed 5. A-Raf residues are identified that bind to specific phosphoinositides, possibly as a mechanism to localize the enzyme to particular membrane microdomains rich in these phospholipids.
PubMed 6. These data reveal that B-RAF is an important mediator of neuronal survival, migration, and dendrite formation and that A-RAF cannot fully compensate for these functions.
PubMed 7. A-Raf interacts with MEK1 and activates MEK1 by phosphorylation.

[Top][Help]Interactions

Description ..........
  Product Interactant Other Gene Complex Source Pubs          
A-RAF interacts with ASS.
  NP_001645.1   NP_000041.2   ASS1      BIND    PubMed
A-Raf interacts with ASS.
  NP_001645.1   NP_000041.2   ASS1      BIND    PubMed
 
  NP_001645.1   NP_446464.1   ASS1      HPRD    PubMed
 
  NP_001645.1   NP_003644.2   COPS3      HPRD    PubMed
A-RAF interacts with SGN3.
  NP_001645.1   NP_003644.2   COPS3      BIND    PubMed
ARAF (A-Raf) interacts with COPS3 (SGN3).
  NP_001645.1   NP_003644.2   COPS3      BIND    PubMed
A-RAF interacts with CPS1.
  NP_001645.1   NP_001866.2   CPS1      BIND    PubMed
A-Raf interacts with CPS1.
  NP_001645.1   NP_001866.2   CPS1      BIND    PubMed
 
  NP_001645.1   NP_001311.3   CSNK2B      HPRD    PubMed
 
  NP_001645.1   NP_004096.2   EFEMP1      HPRD    PubMed
A-RAF interacts with FBNL.
  NP_001645.1   NP_004096.2   EFEMP1      BIND    PubMed
A-Raf interacts with an unspecified isoform of FBNL.
  NP_001645.1      EFEMP1      BIND    PubMed
ARAF (A-Raf) interacts with an unspecified isoform of HRAS (Ha-Ras).
  NP_001645.1      HRAS      BIND    PubMed
MEK1 interacts with A-Raf.
  NP_001645.1   NP_002746.1   MAP2K1      BIND    PubMed
 
  NP_001645.1   NP_109587.1   MAP2K2      HPRD    PubMed
MEK2 interacts with A-Raf
  NP_001645.1   NP_109587.1   MAP2K2      BIND    PubMed
 
  NP_001645.1   NP_803877.2   NUDT14      HPRD    PubMed
ARAF (A-Raf) interacts with NUDT14 (hA21).
  NP_001645.1   NP_803877.2   NUDT14      BIND    PubMed
 
  NP_001645.1   NP_060962.2   PBK      HPRD    PubMed
A-RAF interacts with TOPK/PBK.
  NP_001645.1   NP_060962.2   PBK      BIND    PubMed
A-Raf interacts with TOPK.
  NP_001645.1   NP_060962.2   PBK      BIND    PubMed
 
  NP_001645.1   Phosphatidylinositol 3 kinase regulatory subunit, alpha   PIK3R1      HPRD    PubMed
ARAF (A-Raf) interacts with an unspecified isoform of PKM2 (PyK).
  NP_001645.1      PKM2      BIND    PubMed
A-Raf interacts with TOM.
  NP_001645.1   NP_036601.2   PRPF6      BIND    PubMed
A-RAF interacts with RABGGT-beta.
  NP_001645.1   NP_004573.2   RABGGTB      BIND    PubMed
A-Raf interacts with RABGGT-beta.
  NP_001645.1   NP_004573.2   RABGGTB      BIND    PubMed
 
  NP_001645.1   Ras related protein   RRAS      HPRD    PubMed
A-RAF interacts with R-RAS.
  NP_001645.1   NP_036382.2   RRAS2      BIND    PubMed
A-Raf interacts with R-Ras.
  NP_001645.1   NP_036382.2   RRAS2      BIND    PubMed
A-RAF interacts with TH1.
  NP_001645.1   NP_057481.2   TH1L      BIND    PubMed
 
  NP_001645.1   NP_945327.1   TH1L      HPRD    PubMed
A-Raf interacts with an unspecified isoform of TH1.
  NP_001645.1      TH1L      BIND    PubMed
A-RAF interacts with TIMM44.
  NP_001645.1   NP_006342.2   TIMM44      BIND    PubMed
A-Raf interacts with TIMM44.
  NP_001645.1   NP_006342.2   TIMM44      BIND    PubMed
 
  NP_001645.1   TIM44   TIMM44      HPRD    PubMed
A-RAF interacts with TIMM50.
  NP_001645.1   NP_001001563.1   TIMM50      BIND    PubMed
ARAF (A-Raf) interacts with TIMM50 (hC22).
  NP_001645.1   NP_001001563.1   TIMM50      BIND    PubMed
 
  NP_001645.1   CPSI        HPRD    PubMed
 
  NP_001645.1   RABGGT beta        HPRD    PubMed
 
  NP_001645.1   TH1        HPRD    PubMed
 
  NP_001645.1   TOM        HPRD    PubMed
 
  Serine/threonine protein kinase Araf1   NP_036601.2   PRPF6      HPRD    PubMed
Two-hybrid
  BioGRID:106864   BioGRID:106937   ASS1      BioGRID    PubMed
Two-hybrid
  BioGRID:106864   BioGRID:114103   COPS3      BioGRID    PubMed
Two-hybrid
  BioGRID:106864   BioGRID:107843   CSNK2B      BioGRID    PubMed
Two-hybrid
  BioGRID:106864   BioGRID:108496   EFEMP1      BioGRID    PubMed
Two-hybrid
  BioGRID:106864   BioGRID:121890   KLHL12      BioGRID    PubMed
Reconstituted Complex; Two-hybrid
  BioGRID:106864   BioGRID:111591   MAP2K2      BioGRID    PubMed
Two-hybrid
  BioGRID:106864   BioGRID:120971   PBK      BioGRID    PubMed
Reconstituted Complex
  BioGRID:106864   BioGRID:111313   PIK3R1      BioGRID    PubMed
Two-hybrid
  BioGRID:106864   BioGRID:117298   PRPF6      BioGRID    PubMed
Two-hybrid
  BioGRID:106864   BioGRID:111814   RABGGTB      BioGRID    PubMed
Two-hybrid
  BioGRID:106864   BioGRID:112151   RRAS      BioGRID    PubMed
Affinity Capture-MS
  BioGRID:106864   BioGRID:109072   SFN      BioGRID    PubMed
Affinity Capture-Western; Reconstituted Complex; Two-hybrid
  BioGRID:106864   BioGRID:119572   TH1L      BioGRID    PubMed
Two-hybrid
  BioGRID:106864   BioGRID:115732   TIMM44      BioGRID    PubMed
Affinity Capture-MS
  BioGRID:106864   BioGRID:113364   YWHAG      BioGRID    PubMed
Affinity Capture-Western
  BioGRID:106864   BioGRID:113365   YWHAH      BioGRID    PubMed

[Top][Help]General gene information

Markers

RH93525(e-PCR)
Links: UniSTS:85565
G23742(e-PCR)
Links: UniSTS:73050
GDB:182582(e-PCR)
Links: UniSTS:99173
STS-M13829(e-PCR)
Links: UniSTS:72051
RH79745(e-PCR)
Links: UniSTS:92291
ARAF1__4348(e-PCR)
Links: UniSTS:462739
PMC193924P5(e-PCR)
Links: UniSTS:271767
WI-6972(e-PCR)
Links: UniSTS:18142
RH79877(e-PCR)
Links: UniSTS:89581
SGC30176(e-PCR)
Links: UniSTS:47359

Related pseudogene(s)

2 foundReview record(s) in Gene

Homology

Homologs of the ARAF gene The ARAF gene is conserved in dog, cow, mouse, rat, and zebrafish.


Map Viewer (Mouse, Rat)

Pathways

KEGG pathway: Acute myeloid leukemia
05221
KEGG pathway: Bladder cancer
05219
KEGG pathway: Chronic myeloid leukemia
05220
KEGG pathway: Colorectal cancer
05210
KEGG pathway: Endometrial cancer
05213
KEGG pathway: ErbB signaling pathway
04012
KEGG pathway: Glioma
05214
KEGG pathway: Insulin signaling pathway
04910
KEGG pathway: Long-term depression
04730
KEGG pathway: Long-term potentiation
04720
KEGG pathway: Melanoma
05218
KEGG pathway: Natural killer cell mediated cytotoxicity
04650
KEGG pathway: Non-small cell lung cancer
05223
KEGG pathway: Pancreatic cancer
05212
KEGG pathway: Pathways in cancer
05200
KEGG pathway: Prostate cancer
05215
KEGG pathway: Regulation of actin cytoskeleton
04810
KEGG pathway: Renal cell carcinoma
05211
KEGG pathway: Vascular smooth muscle contraction
04270

[Top][Help]General protein information

Preferred Names
v-raf murine sarcoma 3611 viral oncogene homolog
Names
v-raf murine sarcoma 3611 viral oncogene homolog
Oncogene ARAF1
Ras-binding protein DA-Raf
v-raf murine sarcoma 3611 viral oncogene homolog 1
NP_001645.1
EC 2.7.11.1

[Top][Help]NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

mRNA and Protein(s)

  1. NM_001654.2NP_001645.1  v-raf murine sarcoma 3611 viral oncogene homolog

    Source sequence(s)
    BC002466,DA264472
    Consensus CDS
    CCDS35232.1
    UniProtKB/Swiss-Prot
    P10398
    Conserved Domains (4) summary
    cd00029
    Location:99144
    Blast Score: 147
    C1; Protein kinase C conserved region 1 (C1) . Cysteine-rich zinc binding domain. Some members of this domain family bind phorbol esters and diacylglycerol, some are reported to bind RasGTP. May occur in tandem arrangement. Diacylglycerol (DAG) is a second...
    cd00180
    Location:311565
    Blast Score: 528
    S_TKc; Serine/Threonine protein kinases, catalytic domain. Phosphotransferases of the serine or threonine-specific kinase subfamily. The enzymatic activity of these protein kinases is controlled by phosphorylation of specific residues in the activation...
    cd01816
    Location:2091
    Blast Score: 277
    Raf_RBD; CR2 and CR3. CR1 has two Ras binding domains (RBD and CRD), CR2 is a serine/threonine rich domain and CR3 is the catalytic kinase domain. The RBD of Raf is structurally similar to ubiquitin with little of no sequence similarity.The Raf signalling...
    pfam00069
    Location:311564
    Blast Score: 612
    Pkinase; Protein kinase domain

RefSeqs of Annotated Genomes: Build 37.1

The following sections contain reference sequences that belong to a specific genome build. Explain

Genome Reference Consortium Human Build 37 (GRCh37), Primary_Assembly

Genomic

  1. NC_000023.10

    Range
    47420577..47431319
    Download
    GenBank FASTA Sequence Viewer (Graphics)
  2. NT_079573.4 

    Range
    10272321..10283063
    Download
    GenBank FASTA Sequence Viewer (Graphics)

Alternate assembly (Celera)

Genomic

  1. AC_000066.1

    Range
    51615835..51626576
    Download
    GenBank FASTA Sequence Viewer (Graphics)
  2. NW_927702.1 

    Range
    2427176..2437917
    Download
    GenBank FASTA Sequence Viewer (Graphics)

Alternate assembly (HuRef)

Genomic

  1. AC_000155.1

    Range
    45132809..45143539
    Download
    GenBank FASTA Sequence Viewer (Graphics)
  2. NW_001842362.1 

    Range
    2418806..2429536
    Download
    GenBank FASTA Sequence Viewer (Graphics)

[Top][Help]Related Sequences

  Nucleotide   Protein
  genomic   CH471164.1   EAW59310.1
       EAW59311.1
       EAW59312.1
  genomic   L24038.1   AAA65219.1
  genomic   U01337.1   AAB03517.1
  genomic   Z84466.2   CAI42468.1
       CAI42469.1
  mRNA   AB158254.1   BAE66645.1
  mRNA   AB208831.1   BAD92068.1
  mRNA   AF052136.1   None
  mRNA   AK130043.1   None
  mRNA   AK297453.1   BAG59877.1
  mRNA   AK300975.1   BAG62597.1
  mRNA   AK307747.1   None
  mRNA   BC002466.2   AAH02466.1
  mRNA   BC007514.2   AAH07514.1
  mRNA   BT019864.1   AAV38667.1
  mRNA   CR605071.1   None
  mRNA   DA264472.1   None
  mRNA   M13829.1   AAB08754.1
  mRNA   X04790.1   CAA28476.1
  other-genetic   DQ892656.2   ABM83582.1
  other-genetic   DQ895896.2   ABM86822.1
Protein Accession   Links
P10398.2   GenPept   UniProtKB/Swiss-Prot:P10398
Q59HC8   GenPept   UniProtKB/TrEMBL:Q59HC8
Q5H9B2   GenPept   UniProtKB/TrEMBL:Q5H9B2
Q96II5   GenPept   UniProtKB/TrEMBL:Q96II5

[Top][Help]Additional Links

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