A novel ATP-generating machinery to counter nitrosative stress is mediated by substrate-level phosphorylation

Biochim Biophys Acta. 2015 Jan;1850(1):43-50. doi: 10.1016/j.bbagen.2014.09.028. Epub 2014 Oct 7.

Abstract

Background: It is well-known that elevated amounts of nitric oxide and other reactive nitrogen species (RNS) impact negatively on the tricarboxylic acid (TCA) cycle and oxidative phosphorylation. These perturbations severely compromise O2-dependent energy production. While bacteria are known to adapt to RNS, a key tool employed by macrophages to combat infections, the exact mechanisms are unknown.

Methods: The bacterium was cultured in a defined mineral medium and cell-free extracts obtained at the same growth phase were utilized for various biochemical studies Blue native polyacrylamide gel electrophoresis followed by in-gel activity assays, high performance liquid chromatography and co-immunoprecipitaton are applied to investigate the effects of RNS on the model microbe Pseudomonas fluorescens.

Results: Citrate is channeled away from the tricarboxylic acid cycle using a novel metabolon consisting of citrate lyase (CL), phosphoenolpyruvate carboxylase (PEPC) and pyruvate phosphate dikinase (PPDK). This metabolic engine comprising three disparate enzymes appears to transiently assemble as a supercomplex aimed at ATP synthesis. The up-regulation in the activities of adenylate kinase (AK) and nucleoside diphosphate kinase (NDPK) ensured the efficacy of this ATP-making machine.

Conclusion: Microbes may escape the effects of nitrosative stress by re-engineering metabolic networks in order to generate and store ATP anaerobically when the electron transport chain is defective.

General significance: The molecular configuration described herein provides further understanding of how metabolism plays a key role in the adaptation to nitrosative stress and reveals novel targets that will inform the development of antimicrobial agents to counter RNS-resistant pathogens.

Keywords: Metabolism; Metabolon; Microbiology; Phosphotransfer; Reactive nitrogen species.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Adaptation, Physiological
  • Adenosine Triphosphate / metabolism*
  • Adenylate Kinase / metabolism
  • Bacterial Proteins / metabolism
  • Chromatography, High Pressure Liquid
  • Citric Acid Cycle
  • Electrophoresis, Polyacrylamide Gel
  • Metabolic Networks and Pathways
  • Models, Biological
  • Multienzyme Complexes / metabolism
  • Nitric Oxide / metabolism*
  • Nucleoside-Diphosphate Kinase / metabolism
  • Oxidative Phosphorylation*
  • Oxo-Acid-Lyases / metabolism
  • Phosphoenolpyruvate Carboxylase / metabolism
  • Pseudomonas fluorescens / metabolism
  • Pyruvate, Orthophosphate Dikinase / metabolism
  • Reactive Nitrogen Species / metabolism*
  • Stress, Physiological

Substances

  • Bacterial Proteins
  • Multienzyme Complexes
  • Reactive Nitrogen Species
  • Nitric Oxide
  • Adenosine Triphosphate
  • Adenylate Kinase
  • Nucleoside-Diphosphate Kinase
  • Pyruvate, Orthophosphate Dikinase
  • Phosphoenolpyruvate Carboxylase
  • Oxo-Acid-Lyases
  • citrate (pro-3S)-lyase