Substrate-induced conformational changes in Escherichia coli arginyl-tRNA synthetase observed by 19F NMR spectroscopy

FEBS Lett. 2003 Jul 17;547(1-3):197-200. doi: 10.1016/s0014-5793(03)00717-8.

Abstract

The 19F nuclear magnetic resonance (NMR) spectra of 4-fluorotryptophan (4-F-Trp)-labeled Escherichia coli arginyl-tRNA synthetase (ArgRS) show that there are distinct conformational changes in the catalytic core and tRNA anticodon stem and loop-binding domain of the enzyme, when arginine and tRNA(Arg) are added to the unliganded enzyme. We have assigned five fluorine resonances of 4-F-Trp residues (162, 172, 228, 349 and 446) in the spectrum of the fluorinated enzyme by site-directed mutagenesis. The local conformational changes of E. coli ArgRS induced by its substrates observed herein by 19F NMR are similar to those of crystalline yeast homologous enzyme.

MeSH terms

  • Anticodon / genetics
  • Arginine / metabolism
  • Arginine-tRNA Ligase / chemistry*
  • Arginine-tRNA Ligase / metabolism*
  • Binding Sites
  • Catalytic Domain
  • Escherichia coli / enzymology*
  • Magnetic Resonance Spectroscopy / methods
  • Models, Molecular
  • Protein Conformation
  • Protein Structure, Secondary
  • RNA, Transfer, Arg / metabolism
  • Substrate Specificity
  • Tryptophan / analogs & derivatives*

Substances

  • Anticodon
  • RNA, Transfer, Arg
  • 4-fluorotryptophan
  • Tryptophan
  • Arginine
  • Arginine-tRNA Ligase