Exploring the role of amino acid-18 of the leucine binding proteins of E. coli

J Biomol Struct Dyn. 2002 Dec;20(3):381-7. doi: 10.1080/07391102.2002.10506856.

Abstract

Two periplasmic binding proteins of E. coli, the leucine specific-binding protein (LS) and leucine-isoleucine-valine binding protein (LIV), have high similarity in their structure and function, but show different substrate specificity. A key difference between these proteins is residue 18 in the binding pocket, a tryptophan residue in the LS and a tyrosine residue in the LIV. To examine the role of this residue in binding specificity, we used fluorescence and (19)F NMR to monitor ligand binding to three mutants: LSW18Y, LSW18F and LIVY18W. We observed leucine binding to all proteins. LS binds L-phenylalanine but the mutation from Trp to Tyr or Phe disallows this ligand and expands the binding repertoire to L-isoleucine and L-valine. The LIVY18W mutant still retains the ability to bind L-isoleucine and also binds L-phenylalanine.

Publication types

  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Amino Acid Sequence
  • Amino Acids, Branched-Chain / metabolism
  • Bacterial Proteins / genetics
  • Bacterial Proteins / metabolism
  • Crystallography, X-Ray
  • Escherichia coli / genetics
  • Escherichia coli / metabolism*
  • Genes, Bacterial
  • Leucine / metabolism*
  • Ligands
  • Membrane Proteins / genetics
  • Membrane Proteins / metabolism
  • Models, Molecular
  • Mutagenesis, Site-Directed
  • Nuclear Magnetic Resonance, Biomolecular
  • Point Mutation
  • Protein Conformation
  • Protein Denaturation
  • Protein Structure, Tertiary
  • Structure-Activity Relationship
  • Substrate Specificity
  • Tryptophan / metabolism
  • Urea

Substances

  • Amino Acids, Branched-Chain
  • Bacterial Proteins
  • Ligands
  • Membrane Proteins
  • Tryptophan
  • Urea
  • Leucine