PubMed

Generic and specific adaptative response of Streptococcus pneumoniae to challenge with three distinct antimicrobial peptides: bacitracin, LL-37 and nisin.

Majchrzykiewicz JA, Kuipers OP, Bijlsma JJ.

Antimicrob Agents Chemother. 2009 Nov 16. [Epub ahead of print]PMID: 19917758 [PubMed - as supplied by publisher]Related articles

Response of Bacillus cereus ATCC 14579 to challenges with sublethal concentrations of enterocin AS-48.

Grande Burgos MJ, Kovács AT, Mirończuk AM, Abriouel H, Gálvez A, Kuipers OP.

BMC Microbiol. 2009 Oct 28;9:227.PMID: 19863785 [PubMed - in process]Related articlesFree article

Mechanisms and evolution of control logic in prokaryotic transcriptional regulation.

van Hijum SA, Medema MH, Kuipers OP.

Microbiol Mol Biol Rev. 2009 Sep;73(3):481-509, Table of Contents.PMID: 19721087 [PubMed - in process]Related articles

Directionality and coordination of dehydration and ring formation during biosynthesis of the lantibiotic nisin.

Lubelski J, Khusainov R, Kuipers OP.

J Biol Chem. 2009 Sep 18;284(38):25962-72. Epub 2009 Jul 20.PMID: 19620240 [PubMed - indexed for MEDLINE]Related articles

Ubiquitous late competence genes in Bacillus species indicate the presence of functional DNA uptake machineries.

Kovács AT, Smits WK, Mirończuk AM, Kuipers OP.

Environ Microbiol. 2009 Aug;11(8):1911-22. Epub 2009 May 14. Review.PMID: 19453701 [PubMed - indexed for MEDLINE]Related articles

Subcellular localization of TatAd of Bacillus subtilis depends on the presence of TatCd or TatCy.

Ridder AN, de Jong EJ, Jongbloed JD, Kuipers OP.

J Bacteriol. 2009 Jul;191(13):4410-8. Epub 2009 Apr 24.PMID: 19395490 [PubMed - indexed for MEDLINE]Related articles

Effects of altered TatC proteins on protein secretion efficiency via the twin-arginine translocation pathway of Bacillus subtilis.

Eijlander RT, Kolbusz MA, Berendsen EM, Kuipers OP.

Microbiology. 2009 Jun;155(Pt 6):1776-85. Epub 2009 Apr 21.PMID: 19383693 [PubMed - indexed for MEDLINE]Related articles

Strain-specific impact of PsaR of Streptococcus pneumoniae on global gene expression and virulence.

Hendriksen WT, Bootsma HJ, van Diepen A, Estevão S, Kuipers OP, de Groot R, Hermans PW.

Microbiology. 2009 May;155(Pt 5):1569-79. Epub 2009 Apr 16.PMID: 19372167 [PubMed - indexed for MEDLINE]Related articles

MOTIFATOR: detection and characterization of regulatory motifs using prokaryote transcriptome data.

Blom EJ, Roerdink JB, Kuipers OP, van Hijum SA.

Bioinformatics. 2009 Feb 15;25(4):550-1. Epub 2009 Jan 25.PMID: 19168910 [PubMed - indexed for MEDLINE]Related articles

Copper acquisition is mediated by YcnJ and regulated by YcnK and CsoR in Bacillus subtilis.

Chillappagari S, Miethke M, Trip H, Kuipers OP, Marahiel MA.

J Bacteriol. 2009 Apr;191(7):2362-70. Epub 2009 Jan 23.PMID: 19168619 [PubMed - indexed for MEDLINE]Related articlesFree article

DISCLOSE : DISsection of CLusters Obtained by SEries of transcriptome data using functional annotations and putative transcription factor binding sites.

Blom EJ, van Hijum SA, Hofstede KJ, Silvis R, Roerdink JB, Kuipers OP.

BMC Bioinformatics. 2008 Dec 16;9:535.PMID: 19087282 [PubMed - indexed for MEDLINE]Related articlesFree article

Optimization of protein secretion by Bacillus subtilis.

Nijland R, Kuipers OP.

Recent Pat Biotechnol. 2008;2(2):79-87. Review.PMID: 19075856 [PubMed - indexed for MEDLINE]Related articles

Characterization of the individual glucose uptake systems of Lactococcus lactis: mannose-PTS, cellobiose-PTS and the novel GlcU permease.

Castro R, Neves AR, Fonseca LL, Pool WA, Kok J, Kuipers OP, Santos H.

Mol Microbiol. 2009 Feb;71(3):795-806. Epub 2008 Dec 1.PMID: 19054326 [PubMed - indexed for MEDLINE]Related articles

The twin-arginine translocation (Tat) systems from Bacillus subtilis display a conserved mode of complex organization and similar substrate recognition requirements.

Barnett JP, van der Ploeg R, Eijlander RT, Nenninger A, Mendel S, Rozeboom R, Kuipers OP, van Dijl JM, Robinson C.

FEBS J. 2009 Jan;276(1):232-43. Epub 2008 Nov 25.PMID: 19049517 [PubMed - indexed for MEDLINE]Related articles

MINOMICS: visualizing prokaryote transcriptomics and proteomics data in a genomic context.

Brouwer RW, van Hijum SA, Kuipers OP.

Bioinformatics. 2009 Jan 1;25(1):139-40. Epub 2008 Nov 12.PMID: 19008250 [PubMed - indexed for MEDLINE]Related articles

Relaxed specificity of the Bacillus subtilis TatAdCd translocase in Tat-dependent protein secretion.

Eijlander RT, Jongbloed JD, Kuipers OP.

J Bacteriol. 2009 Jan;191(1):196-202. Epub 2008 Oct 31.PMID: 18978042 [PubMed - indexed for MEDLINE]Related articlesFree article

Prosecutor: parameter-free inference of gene function for prokaryotes using DNA microarray data, genomic context and multiple gene annotation sources.

Blom EJ, Breitling R, Hofstede KJ, Roerdink JB, van Hijum SA, Kuipers OP.

BMC Genomics. 2008 Oct 21;9:495.PMID: 18939968 [PubMed - indexed for MEDLINE]Related articlesFree article

The ABC-type multidrug resistance transporter LmrCD is responsible for an extrusion-based mechanism of bile acid resistance in Lactococcus lactis.

Zaidi AH, Bakkes PJ, Lubelski J, Agustiandari H, Kuipers OP, Driessen AJ.

J Bacteriol. 2008 Nov;190(22):7357-66. Epub 2008 Sep 12.PMID: 18790870 [PubMed - indexed for MEDLINE]Related articlesFree article

9th International Symposium on Lactic Acid Bacteria.

Kuipers OP, Poolman B, Hugenholtz J.

Appl Environ Microbiol. 2008 Aug;74(15):4589. Epub 2008 Jun 27. No abstract available. PMID: 18586976 [PubMed - indexed for MEDLINE]Related articlesFree article

Improvement of Lactobacillus plantarum aerobic growth as directed by comprehensive transcriptome analysis.

Stevens MJ, Wiersma A, de Vos WM, Kuipers OP, Smid EJ, Molenaar D, Kleerebezem M.

Appl Environ Microbiol. 2008 Aug;74(15):4776-8. Epub 2008 Jun 6.PMID: 18539801 [PubMed - indexed for MEDLINE]Related articlesFree article