PubMed

KEGG for representation and analysis of molecular networks involving diseases and drugs.

Kanehisa M, Goto S, Furumichi M, Tanabe M, Hirakawa M.

Nucleic Acids Res. 2009 Oct 30. [Epub ahead of print]PMID: 19880382 [PubMed - as supplied by publisher]Related articlesFree article

varDB: A database of antigenic variant sequences-Current status and future prospects.

Diez D, Hayes N, Joannin N, Normark J, Kanehisa M, Wahlgren M, Wheelock CE, Goto S.

Acta Trop. 2009 Jun 17. [Epub ahead of print]PMID: 19539588 [PubMed - as supplied by publisher]Related articles

E-zyme: predicting potential EC numbers from the chemical transformation pattern of substrate-product pairs.

Yamanishi Y, Hattori M, Kotera M, Goto S, Kanehisa M.

Bioinformatics. 2009 Jun 15;25(12):i179-86.PMID: 19477985 [PubMed - indexed for MEDLINE]Related articlesFree article

Systems biology approaches and pathway tools for investigating cardiovascular disease.

Wheelock CE, Wheelock AM, Kawashima S, Diez D, Kanehisa M, van Erk M, Kleemann R, Haeggström JZ, Goto S.

Mol Biosyst. 2009 Jun;5(6):588-602. Epub 2009 Apr 27. Review.PMID: 19462016 [PubMed - indexed for MEDLINE]Related articles

Domain shuffling and the evolution of vertebrates.

Kawashima T, Kawashima S, Tanaka C, Murai M, Yoneda M, Putnam NH, Rokhsar DS, Kanehisa M, Satoh N, Wada H.

Genome Res. 2009 Aug;19(8):1393-403. Epub 2009 May 14.PMID: 19443856 [PubMed - indexed for MEDLINE]Related articles

Extraction and analysis of chemical modification patterns in drug development.

Shigemizu D, Araki M, Okuda S, Goto S, Kanehisa M.

J Chem Inf Model. 2009 Apr;49(4):1122-9.PMID: 19391632 [PubMed - indexed for MEDLINE]Related articles

Comprehensive analysis of glycosyltransferases in eukaryotic genomes for structural and functional characterization of glycans.

Hashimoto K, Tokimatsu T, Kawano S, Yoshizawa AC, Okuda S, Goto S, Kanehisa M.

Carbohydr Res. 2009 May 12;344(7):881-7. Epub 2009 Mar 9.PMID: 19327755 [PubMed - indexed for MEDLINE]Related articles

[Bioinformatics, systems biology and KEGG]

Honda W, Tanabe M, Yano A, Kanehisa M.

Seikagaku. 2008 Dec;80(12):1094-111. Review. Japanese. No abstract available. PMID: 19172790 [PubMed - indexed for MEDLINE]Related articles

Characterization and evolutionary landscape of AmnSINE1 in Amniota genomes.

Hirakawa M, Nishihara H, Kanehisa M, Okada N.

Gene. 2009 Jul 15;441(1-2):100-10. Epub 2008 Dec 24.PMID: 19166919 [PubMed - indexed for MEDLINE]Related articles

varDB: a pathogen-specific sequence database of protein families involved in antigenic variation.

Hayes CN, Diez D, Joannin N, Honda W, Kanehisa M, Wahlgren M, Wheelock CE, Goto S.

Bioinformatics. 2008 Nov 1;24(21):2564-5. Epub 2008 Sep 6.PMID: 18776192 [PubMed - indexed for MEDLINE]Related articlesFree article

Preparation of pH-sensitive liposomes retaining SOD mimic and their anticancer effect.

Hiraka K, Kanehisa M, Tamai M, Asayama S, Nagaoka S, Oyaizu K, Yuasa M, Kawakami H.

Colloids Surf B Biointerfaces. 2008 Nov 15;67(1):54-8. Epub 2008 Aug 5.PMID: 18775654 [PubMed - indexed for MEDLINE]Related articles

Mining significant tree patterns in carbohydrate sugar chains.

Hashimoto K, Takigawa I, Shiga M, Kanehisa M, Mamitsuka H.

Bioinformatics. 2008 Aug 15;24(16):i167-73.PMID: 18689820 [PubMed - indexed for MEDLINE]Related articlesFree article

Prediction of drug-target interaction networks from the integration of chemical and genomic spaces.

Yamanishi Y, Araki M, Gutteridge A, Honda W, Kanehisa M.

Bioinformatics. 2008 Jul 1;24(13):i232-40.PMID: 18586719 [PubMed - indexed for MEDLINE]Related articlesFree article

Comparative pair-wise domain-combinations for screening the clade specific domain-architectures in metazoan genomes.

Kawashima S, Kawashima T, Putnam NH, Rokhsar DS, Wada H, Kanehisa M.

Genome Inform. 2007;19:50-60.PMID: 18546504 [PubMed - indexed for MEDLINE]Related articlesFree article

Predicting B cell epitope residues with network topology based amino acid indices.

Huang J, Honda W, Kanehisa M.

Genome Inform. 2007;19:40-9.PMID: 18546503 [PubMed - indexed for MEDLINE]Related articlesFree article

Analysis of common substructures of metabolic compounds within the different organism groups.

Muto A, Hattori M, Kanehisa M.

Genome Inform. 2007;18:299-307.PMID: 18546497 [PubMed - indexed for MEDLINE]Related articlesFree article

An improved scoring scheme for predicting glycan structures from gene expression data.

Suga A, Yamanishi Y, Hashimoto K, Goto S, Kanehisa M.

Genome Inform. 2007;18:237-46.PMID: 18546491 [PubMed - indexed for MEDLINE]Related articlesFree article

New amino acid indices based on residue network topology.

Huang J, Kawashima S, Kanehisa M.

Genome Inform. 2007;18:152-61.PMID: 18546483 [PubMed - indexed for MEDLINE]Related articlesFree article

KEGG Atlas mapping for global analysis of metabolic pathways.

Okuda S, Yamada T, Hamajima M, Itoh M, Katayama T, Bork P, Goto S, Kanehisa M.

Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W423-6. Epub 2008 May 13.PMID: 18477636 [PubMed - indexed for MEDLINE]Related articlesFree article

Using the KEGG database resource.

Aoki KF, Kanehisa M.

Curr Protoc Bioinformatics. 2005 Oct;Chapter 1:Unit 1.12.PMID: 18428742 [PubMed - indexed for MEDLINE]Related articles