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    Results: 14

    1.

    Environmentally relevant parameters affecting PCB degradation: carbon source- and growth phase-mitigated effects of the expression of the biphenyl pathway and associated genes in Burkholderia xenovorans LB400.

    Parnell JJ, Denef VJ, Park J, Tsoi T, Tiedje JM.

    Biodegradation. 2009 Aug 12. [Epub ahead of print]PMID: 19672561 [PubMed - as supplied by publisher]Related articles

    2.

    Community genomic and proteomic analyses of chemoautotrophic iron-oxidizing "Leptospirillum rubarum" (Group II) and "Leptospirillum ferrodiazotrophum" (Group III) bacteria in acid mine drainage biofilms.

    Goltsman DS, Denef VJ, Singer SW, VerBerkmoes NC, Lefsrud M, Mueller RS, Dick GJ, Sun CL, Wheeler KE, Zemla A, Baker BJ, Hauser L, Land M, Shah MB, Thelen MP, Hettich RL, Banfield JF.

    Appl Environ Microbiol. 2009 Jul;75(13):4599-615. Epub 2009 May 8.PMID: 19429552 [PubMed - indexed for MEDLINE]Related articles

    3.

    Systems biology: Functional analysis of natural microbial consortia using community proteomics.

    VerBerkmoes NC, Denef VJ, Hettich RL, Banfield JF.

    Nat Rev Microbiol. 2009 Mar;7(3):196-205. Review.PMID: 19219053 [PubMed - indexed for MEDLINE]Related articles

    4.

    The dynamic genetic repertoire of microbial communities.

    Wilmes P, Simmons SL, Denef VJ, Banfield JF.

    FEMS Microbiol Rev. 2009 Jan;33(1):109-32. Epub 2008 Nov 24. Review.PMID: 19054116 [PubMed - indexed for MEDLINE]Related articlesFree article

    5.

    Proteomics-inferred genome typing (PIGT) demonstrates inter-population recombination as a strategy for environmental adaptation.

    Denef VJ, VerBerkmoes NC, Shah MB, Abraham P, Lefsrud M, Hettich RL, Banfield JF.

    Environ Microbiol. 2009 Feb;11(2):313-25. Epub 2008 Sep 23.PMID: 18826438 [PubMed - indexed for MEDLINE]Related articles

    6.

    Population genomic analysis of strain variation in Leptospirillum group II bacteria involved in acid mine drainage formation.

    Simmons SL, Dibartolo G, Denef VJ, Goltsman DS, Thelen MP, Banfield JF.

    PLoS Biol. 2008 Jul 22;6(7):e177.PMID: 18651792 [PubMed - indexed for MEDLINE]Related articlesFree article

    7.

    Implications of strain- and species-level sequence divergence for community and isolate shotgun proteomic analysis.

    Denef VJ, Shah MB, Verberkmoes NC, Hettich RL, Banfield JF.

    J Proteome Res. 2007 Aug;6(8):3152-61. Epub 2007 Jun 28.PMID: 17602579 [PubMed - indexed for MEDLINE]Related articles

    8.

    Strain-resolved community proteomics reveals recombining genomes of acidophilic bacteria.

    Lo I, Denef VJ, Verberkmoes NC, Shah MB, Goltsman D, DiBartolo G, Tyson GW, Allen EE, Ram RJ, Detter JC, Richardson P, Thelen MP, Hettich RL, Banfield JF.

    Nature. 2007 Mar 29;446(7135):537-41. Epub 2007 Mar 7.PMID: 17344860 [PubMed - indexed for MEDLINE]Related articles

    9.

    Burkholderia xenovorans LB400 harbors a multi-replicon, 9.73-Mbp genome shaped for versatility.

    Chain PS, Denef VJ, Konstantinidis KT, Vergez LM, Agulló L, Reyes VL, Hauser L, Córdova M, Gómez L, González M, Land M, Lao V, Larimer F, LiPuma JJ, Mahenthiralingam E, Malfatti SA, Marx CJ, Parnell JJ, Ramette A, Richardson P, Seeger M, Smith D, Spilker T, Sul WJ, Tsoi TV, Ulrich LE, Zhulin IB, Tiedje JM.

    Proc Natl Acad Sci U S A. 2006 Oct 17;103(42):15280-7. Epub 2006 Oct 9.PMID: 17030797 [PubMed - indexed for MEDLINE]Related articlesFree article

    10.

    Coping with polychlorinated biphenyl (PCB) toxicity: Physiological and genome-wide responses of Burkholderia xenovorans LB400 to PCB-mediated stress.

    Parnell JJ, Park J, Denef V, Tsoi T, Hashsham S, Quensen J 3rd, Tiedje JM.

    Appl Environ Microbiol. 2006 Oct;72(10):6607-14. Epub 2006 Aug 21.PMID: 17021212 [PubMed - indexed for MEDLINE]Related articlesFree article

    11.

    Genetic and genomic insights into the role of benzoate-catabolic pathway redundancy in Burkholderia xenovorans LB400.

    Denef VJ, Klappenbach JA, Patrauchan MA, Florizone C, Rodrigues JL, Tsoi TV, Verstraete W, Eltis LD, Tiedje JM.

    Appl Environ Microbiol. 2006 Jan;72(1):585-95.PMID: 16391095 [PubMed - indexed for MEDLINE]Related articlesFree article

    12.

    Growth substrate- and phase-specific expression of biphenyl, benzoate, and C1 metabolic pathways in Burkholderia xenovorans LB400.

    Denef VJ, Patrauchan MA, Florizone C, Park J, Tsoi TV, Verstraete W, Tiedje JM, Eltis LD.

    J Bacteriol. 2005 Dec;187(23):7996-8005.PMID: 16291673 [PubMed - indexed for MEDLINE]Related articlesFree article

    13.

    Biphenyl and benzoate metabolism in a genomic context: outlining genome-wide metabolic networks in Burkholderia xenovorans LB400.

    Denef VJ, Park J, Tsoi TV, Rouillard JM, Zhang H, Wibbenmeyer JA, Verstraete W, Gulari E, Hashsham SA, Tiedje JM.

    Appl Environ Microbiol. 2004 Aug;70(8):4961-70.PMID: 15294836 [PubMed - indexed for MEDLINE]Related articlesFree article

    14.

    Validation of a more sensitive method for using spotted oligonucleotide DNA microarrays for functional genomics studies on bacterial communities.

    Denef VJ, Park J, Rodrigues JL, Tsoi TV, Hashsham SA, Tiedje JM.

    Environ Microbiol. 2003 Oct;5(10):933-43.PMID: 14510847 [PubMed - indexed for MEDLINE]Related articles

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