PubMed

Crystallization and preliminary X-ray analysis of a novel haloalkane dehalogenase DbeA from Bradyrhizobium elkani USDA94.

Prudnikova T, Mozga T, Rezacova P, Chaloupkova R, Sato Y, Nagata Y, Brynda J, Kuty M, Damborsky J, Smatanova IK.

Acta Crystallogr Sect F Struct Biol Cryst Commun. 2009 Apr 1;65(Pt 4):353-6. Epub 2009 Mar 21.PMID: 19342778 [PubMed - indexed for MEDLINE]Related articles

1,2-dichloroethane in haloalkane dehalogenase protein and in water solvent: a case study of the confinement effect on structural and dynamical properties.

Murugan NA, Agren H.

J Phys Chem B. 2009 Mar 19;113(11):3257-63.PMID: 19235993 [PubMed - indexed for MEDLINE]Related articles

New metabolites in the degradation of alpha- and gamma-hexachlorocyclohexane (HCH): pentachlorocyclohexenes are hydroxylated to cyclohexenols and cyclohexenediols by the haloalkane dehalogenase LinB from Sphingobium indicum B90A.

Raina V, Rentsch D, Geiger T, Sharma P, Buser HR, Holliger C, Lal R, Kohler HP.

J Agric Food Chem. 2008 Aug 13;56(15):6594-603. Epub 2008 Jul 4.PMID: 18598034 [PubMed - indexed for MEDLINE]Related articles

X-ray crystal structure of Mycobacterium tuberculosis haloalkane dehalogenase Rv2579.

Mazumdar PA, Hulecki JC, Cherney MM, Garen CR, James MN.

Biochim Biophys Acta. 2008 Feb;1784(2):351-62. Epub 2007 Nov 13.PMID: 18062934 [PubMed - indexed for MEDLINE]Related articles

Second step of hydrolytic dehalogenation in haloalkane dehalogenase investigated by QM/MM methods.

Otyepka M, Banás P, Magistrato A, Carloni P, Damborský J.

Proteins. 2008 Feb 15;70(3):707-17.PMID: 17729274 [PubMed - indexed for MEDLINE]Related articles

The effect of deuteration on protein structure: a high-resolution comparison of hydrogenous and perdeuterated haloalkane dehalogenase.

Liu X, Hanson BL, Langan P, Viola RE.

Acta Crystallogr D Biol Crystallogr. 2007 Sep;63(Pt 9):1000-8. Epub 2007 Aug 17.PMID: 17704569 [PubMed - indexed for MEDLINE]Related articles

Exploring the binding sites of the haloalkane dehalogenase DhlA from Xanthobacter autotrophicus GJ10.

Silberstein M, Damborsky J, Vajda S.

Biochemistry. 2007 Aug 14;46(32):9239-49. Epub 2007 Jul 24.PMID: 17645312 [PubMed - indexed for MEDLINE]Related articles

Degradation of beta-hexachlorocyclohexane by haloalkane dehalogenase LinB from gamma-hexachlorocyclohexane-utilizing bacterium Sphingobium sp. MI1205.

Ito M, Prokop Z, Klvana M, Otsubo Y, Tsuda M, Damborský J, Nagata Y.

Arch Microbiol. 2007 Oct;188(4):313-25. Epub 2007 May 22.PMID: 17516046 [PubMed - indexed for MEDLINE]Related articles

Stepwise dissection and visualization of the catalytic mechanism of haloalkane dehalogenase LinB using molecular dynamics simulations and computer graphics.

Negri A, Marco E, Damborsky J, Gago F.

J Mol Graph Model. 2007 Oct;26(3):643-51. Epub 2007 Mar 24.PMID: 17451982 [PubMed - indexed for MEDLINE]Related articles

Crystallization and preliminary crystallographic analysis of a haloalkane dehalogenase, DbjA, from Bradyrhizobium japonicum USDA110.

Sato Y, Natsume R, Tsuda M, Damborsky J, Nagata Y, Senda T.

Acta Crystallogr Sect F Struct Biol Cryst Commun. 2007 Apr 1;63(Pt 4):294-6. Epub 2007 Mar 12.PMID: 17401198 [PubMed - indexed for MEDLINE]Related articlesFree article

Weak activity of haloalkane dehalogenase LinB with 1,2,3-trichloropropane revealed by X-Ray crystallography and microcalorimetry.

Monincová M, Prokop Z, Vévodová J, Nagata Y, Damborsky J.

Appl Environ Microbiol. 2007 Mar;73(6):2005-8. Epub 2007 Jan 26.PMID: 17259360 [PubMed - indexed for MEDLINE]Related articlesFree article

The identification of catalytic pentad in the haloalkane dehalogenase DhmA from Mycobacterium avium N85: reaction mechanism and molecular evolution.

Pavlová M, Klvana M, Jesenská A, Prokop Z, Konecná H, Sato T, Tsuda M, Nagata Y, Damborský J.

J Struct Biol. 2007 Feb;157(2):384-92. Epub 2006 Sep 28.PMID: 17084094 [PubMed - indexed for MEDLINE]Related articles

Mechanism of enhanced conversion of 1,2,3-trichloropropane by mutant haloalkane dehalogenase revealed by molecular modeling.

Banás P, Otyepka M, Jerábek P, Petrek M, Damborský J.

J Comput Aided Mol Des. 2006 Jun;20(6):375-83. Epub 2006 Oct 3.PMID: 17016745 [PubMed - indexed for MEDLINE]Related articles

Haloalkane dehalogenase LinB is responsible for beta- and delta-hexachlorocyclohexane transformation in Sphingobium indicum B90A.

Sharma P, Raina V, Kumari R, Malhotra S, Dogra C, Kumari H, Kohler HP, Buser HR, Holliger C, Lal R.

Appl Environ Microbiol. 2006 Sep;72(9):5720-7.PMID: 16957186 [PubMed - indexed for MEDLINE]Related articlesFree article

Expression of glycosylated haloalkane dehalogenase LinB in Pichia pastoris.

Nakamura T, Zámocký M, Zdráhal Z, Chaloupková R, Monincová M, Prokop Z, Nagata Y, Damborský J.

Protein Expr Purif. 2006 Mar;46(1):85-91. Epub 2005 Sep 22.PMID: 16216524 [PubMed - indexed for MEDLINE]Related articles

Degradation of beta-Hexachlorocyclohexane by Haloalkane Dehalogenase LinB from Sphingomonas paucimobilis UT26.

Nagata Y, Prokop Z, Sato Y, Jerabek P, Kumar A, Ohtsubo Y, Tsuda M, Damborsky J.

Appl Environ Microbiol. 2005 Apr;71(4):2183-5.PMID: 15812056 [PubMed - indexed for MEDLINE]Related articlesFree article

Quantitative analysis of substrate specificity of haloalkane dehalogenase LinB from Sphingomonas paucimobilis UT26.

Kmunícek J, Hynková K, Jedlicka T, Nagata Y, Negri A, Gago F, Wade RC, Damborský J.

Biochemistry. 2005 Mar 8;44(9):3390-401.PMID: 15736949 [PubMed - indexed for MEDLINE]Related articles

Dynamic and electrostatic effects in enzymatic processes. An analysis of the nucleophilic substitution reaction in haloalkane dehalogenase.

Soriano A, Silla E, Tuñón I, Ruiz-López MF.

J Am Chem Soc. 2005 Feb 16;127(6):1946-57.PMID: 15701029 [PubMed - indexed for MEDLINE]Related articles

Dynamics of an enzymatic substitution reaction in haloalkane dehalogenase.

Nam K, Prat-Resina X, Garcia-Viloca M, Devi-Kesavan LS, Gao J.

J Am Chem Soc. 2004 Feb 11;126(5):1369-76.PMID: 14759194 [PubMed - indexed for MEDLINE]Related articles

Crystal structure of haloalkane dehalogenase LinB from Sphingomonas paucimobilis UT26 at 0.95 A resolution: dynamics of catalytic residues.

Oakley AJ, Klvana M, Otyepka M, Nagata Y, Wilce MC, Damborský J.

Biochemistry. 2004 Feb 3;43(4):870-8.PMID: 14744129 [PubMed - indexed for MEDLINE]Related articles