PubMed

RNA-protein binding kinetics in an automated microfluidic reactor.

Ridgeway WK, Seitaridou E, Phillips R, Williamson JR.

Nucleic Acids Res. 2009 Sep 16. [Epub ahead of print]PMID: 19759214 [PubMed - as supplied by publisher]Related articlesFree article

Enzymatic synthesis and structural characterization of 13C, 15N-poly(ADP-ribose).

Schultheisz HL, Szymczyna BR, Williamson JR.

J Am Chem Soc. 2009 Oct 14;131(40):14571-8.PMID: 19757771 [PubMed - indexed for MEDLINE]Related articles

A dominant negative mutant of the E. coli RNA helicase DbpA blocks assembly of the 50S ribosomal subunit.

Sharpe Elles LM, Sykes MT, Williamson JR, Uhlenbeck OC.

Nucleic Acids Res. 2009 Oct;37(19):6503-14. Epub 2009 Sep 4.PMID: 19734347 [PubMed - in process]Related articlesFree article

NMR assignments of HIV-2 TAR RNA.

Carlomagno T, Amata I, Williamson JR, Hennig M.

Biomol NMR Assign. 2008 Dec;2(2):167-9. Epub 2008 Oct 12.PMID: 19636896 [PubMed - indexed for MEDLINE]Related articles

Early Neural and Vascular Dysfunction in Diabetic Rats are Largely Sequelae of Increased Sorbitol Oxidation.

Ido Y, Nyengaard JR, Chang K, Tilton RG, Kilo C, Mylari BL, Oates PJ, Williamson JR.

Antioxid Redox Signal. 2009 Jul 22. [Epub ahead of print]PMID: 19624259 [PubMed - as supplied by publisher]Related articles

Stable isotope pulse-chase monitored by quantitative mass spectrometry applied to E. coli 30S ribosome assembly kinetics.

Bunner AE, Williamson JR.

Methods. 2009 Oct;49(2):136-41. Epub 2009 Jun 24.PMID: 19559090 [PubMed - in process]Related articles

My h-index turns 40: my midlife crisis of impact.

Williamson JR.

ACS Chem Biol. 2009 May 15;4(5):311-3. No abstract available. PMID: 19441857 [PubMed - indexed for MEDLINE]Related articles

A complex assembly landscape for the 30S ribosomal subunit.

Sykes MT, Williamson JR.

Annu Rev Biophys. 2009;38:197-215. Review.PMID: 19416066 [PubMed - indexed for MEDLINE]Related articles

Synergy of NMR, computation, and X-ray crystallography for structural biology.

Szymczyna BR, Taurog RE, Young MJ, Snyder JC, Johnson JE, Williamson JR.

Structure. 2009 Apr 15;17(4):499-507.PMID: 19368883 [PubMed - indexed for MEDLINE]Related articles

The universal YrdC/Sua5 family is required for the formation of threonylcarbamoyladenosine in tRNA.

El Yacoubi B, Lyons B, Cruz Y, Reddy R, Nordin B, Agnelli F, Williamson JR, Schimmel P, Swairjo MA, de Crécy-Lagard V.

Nucleic Acids Res. 2009 May;37(9):2894-909. Epub 2009 Mar 13.PMID: 19287007 [PubMed - indexed for MEDLINE]Related articlesFree article

Quantitative ESI-TOF analysis of macromolecular assembly kinetics.

Bunner AE, Trauger SA, Siuzdak G, Williamson JR.

Anal Chem. 2008 Dec 15;80(24):9379-86.PMID: 19007188 [PubMed - indexed for MEDLINE]Related articles

Monitoring assembly of ribonucleoprotein complexes by isothermal titration calorimetry.

Recht MI, Ryder SP, Williamson JR.

Methods Mol Biol. 2008;488:117-27.PMID: 18982287 [PubMed - indexed for MEDLINE]Related articles

Quantitative analysis of protein-RNA interactions by gel mobility shift.

Ryder SP, Recht MI, Williamson JR.

Methods Mol Biol. 2008;488:99-115.PMID: 18982286 [PubMed - indexed for MEDLINE]Related articles

Envelope: interactive software for modeling and fitting complex isotope distributions.

Sykes MT, Williamson JR.

BMC Bioinformatics. 2008 Oct 20;9:446.PMID: 18937869 [PubMed - indexed for MEDLINE]Related articlesFree article

Pathway engineered enzymatic de novo purine nucleotide synthesis.

Schultheisz HL, Szymczyna BR, Scott LG, Williamson JR.

ACS Chem Biol. 2008 Aug 15;3(8):499-511.PMID: 18707057 [PubMed - indexed for MEDLINE]Related articlesFree article

Cooperativity in macromolecular assembly.

Williamson JR.

Nat Chem Biol. 2008 Aug;4(8):458-65.PMID: 18641626 [PubMed - indexed for MEDLINE]Related articles

Biophysical studies of bacterial ribosome assembly.

Williamson JR.

Curr Opin Struct Biol. 2008 Jun;18(3):299-304. Epub 2008 Jun 7. Review.PMID: 18541423 [PubMed - indexed for MEDLINE]Related articlesFree article

Quantitative analysis of isotope distributions in proteomic mass spectrometry using least-squares Fourier transform convolution.

Sperling E, Bunner AE, Sykes MT, Williamson JR.

Anal Chem. 2008 Jul 1;80(13):4906-17. Epub 2008 Jun 4.PMID: 18522437 [PubMed - indexed for MEDLINE]Related articlesFree article

Recent advances in RNA structure determination by NMR.

Hennig M, Williamson JR, Brodsky AS, Battiste JL.

Curr Protoc Nucleic Acid Chem. 2001 May;Chapter 7:Unit 7.7. Review.PMID: 18428875 [PubMed - indexed for MEDLINE]Related articles

Crystal structure of Lsm3 octamer from Saccharomyces cerevisiae: implications for Lsm ring organisation and recruitment.

Naidoo N, Harrop SJ, Sobti M, Haynes PA, Szymczyna BR, Williamson JR, Curmi PM, Mabbutt BC.

J Mol Biol. 2008 Apr 11;377(5):1357-71. Epub 2008 Jan 11.PMID: 18329667 [PubMed - indexed for MEDLINE]Related articles

Protein structure and oligomerization are important for the formation of export-competent HIV-1 Rev-RRE complexes.

Edgcomb SP, Aschrafi A, Kompfner E, Williamson JR, Gerace L, Hennig M.

Protein Sci. 2008 Mar;17(3):420-30. Epub 2008 Jan 24.PMID: 18218716 [PubMed - indexed for MEDLINE]Related articlesFree article

Synthesis of 5-fluoropyrimidine nucleotides as sensitive NMR probes of RNA structure.

Hennig M, Scott LG, Sperling E, Bermel W, Williamson JR.

J Am Chem Soc. 2007 Dec 5;129(48):14911-21. Epub 2007 Nov 9.PMID: 17990877 [PubMed - indexed for MEDLINE]Related articles

Balancing teaching and research in obtaining a faculty position at a predominantly undergraduate institution.

Tahmassebi DC, Williamson JR.

ACS Chem Biol. 2007 Aug 17;2(8):521-4. No abstract available. PMID: 17708667 [PubMed - indexed for MEDLINE]Related articles

Solution NMR studies of the maturation intermediates of a 13 MDa viral capsid.

Szymczyna BR, Gan L, Johnson JE, Williamson JR.

J Am Chem Soc. 2007 Jun 27;129(25):7867-76. Epub 2007 May 31.PMID: 17536799 [PubMed - indexed for MEDLINE]Related articles

A higher degree of difficulty.

Kiessling LL, Doudna JA, Johnsson K, Mapp AK, Marletta MA, Seeberger PH, Williamson JR, Wedde SG.

ACS Chem Biol. 2007 Apr 24;2(4):197-9. No abstract available. PMID: 17455890 [PubMed - indexed for MEDLINE]Related articles

Numerical Matrices Method for nonlinear system identification and description of dynamics of biochemical reaction networks.

Karnaukhov AV, Karnaukhova EV, Williamson JR.

Biophys J. 2007 May 15;92(10):3459-73. Epub 2007 Mar 9.PMID: 17350997 [PubMed - indexed for MEDLINE]Related articlesFree article

Strong coupling effects during X-pulse CPMG experiments recorded on heteronuclear ABX spin systems: artifacts and a simple solution.

Vallurupalli P, Scott L, Williamson JR, Kay LE.

J Biomol NMR. 2007 May;38(1):41-6. Epub 2007 Mar 3.PMID: 17334825 [PubMed - indexed for MEDLINE]Related articles

Assembly of the 30S ribosomal subunit.

Williamson JR.

Q Rev Biophys. 2005 Nov;38(4):397-403.PMID: 16934171 [PubMed - indexed for MEDLINE]Related articles

New RNA labeling methods offer dramatic sensitivity enhancements in 2H NMR relaxation spectra.

Vallurupalli P, Scott L, Hennig M, Williamson JR, Kay LE.

J Am Chem Soc. 2006 Jul 26;128(29):9346-7.PMID: 16848466 [PubMed - indexed for MEDLINE]Related articles

Measurement of long-range 1H-19F scalar coupling constants and their glycosidic torsion dependence in 5-fluoropyrimidine-substituted RNA.

Hennig M, Munzarova ML, Bermel W, Scott LG, Sklenar V, Williamson JR.

J Am Chem Soc. 2006 May 3;128(17):5851-8.PMID: 16637654 [PubMed - indexed for MEDLINE]Related articlesFree article

The RNA Ontology Consortium: an open invitation to the RNA community.

Leontis NB, Altman RB, Berman HM, Brenner SE, Brown JW, Engelke DR, Harvey SC, Holbrook SR, Jossinet F, Lewis SE, Major F, Mathews DH, Richardson JS, Williamson JR, Westhof E.

RNA. 2006 Apr;12(4):533-41. Epub 2006 Feb 16.PMID: 16484377 [PubMed - indexed for MEDLINE]Related articlesFree article

An assembly landscape for the 30S ribosomal subunit.

Talkington MW, Siuzdak G, Williamson JR.

Nature. 2005 Dec 1;438(7068):628-32.PMID: 16319883 [PubMed - indexed for MEDLINE]Related articlesFree article

Dual modes of RNA-silencing suppression by Flock House virus protein B2.

Chao JA, Lee JH, Chapados BR, Debler EW, Schneemann A, Williamson JR.

Nat Struct Mol Biol. 2005 Nov;12(11):952-7.PMID: 16228003 [PubMed - indexed for MEDLINE]Related articles

The binding interface between Bacillus stearothermophilus ribosomal protein S15 and its 5'-translational operator mRNA.

Scott LG, Williamson JR.

J Mol Biol. 2005 Aug 12;351(2):280-90.PMID: 16005889 [PubMed - indexed for MEDLINE]Related articles

RNA helical packing in solution: NMR structure of a 30 kDa GAAA tetraloop-receptor complex.

Davis JH, Tonelli M, Scott LG, Jaeger L, Williamson JR, Butcher SE.

J Mol Biol. 2005 Aug 12;351(2):371-82. Erratum in: J Mol Biol. 2006 Jul 14;360(3):742. PMID: 16002091 [PubMed - indexed for MEDLINE]Related articles

The catalytic diversity of RNAs.

Fedor MJ, Williamson JR.

Nat Rev Mol Cell Biol. 2005 May;6(5):399-412. Review.PMID: 15956979 [PubMed - indexed for MEDLINE]Related articles

Reactive carbonyls and polyunsaturated fatty acids produce a hydroxyl radical-like species: a potential pathway for oxidative damage of retinal proteins in diabetes.

Pennathur S, Ido Y, Heller JI, Byun J, Danda R, Pergola P, Williamson JR, Heinecke JW.

J Biol Chem. 2005 Jun 17;280(24):22706-14. Epub 2005 Apr 25.PMID: 15855169 [PubMed - indexed for MEDLINE]Related articlesFree article

A potent sorbitol dehydrogenase inhibitor exacerbates sympathetic autonomic neuropathy in rats with streptozotocin-induced diabetes.

Schmidt RE, Dorsey DA, Beaudet LN, Parvin CA, Yarasheski KE, Smith SR, Williamson JR, Peterson RG, Oates PJ.

Exp Neurol. 2005 Apr;192(2):407-19.PMID: 15755558 [PubMed - indexed for MEDLINE]Related articles

Shape-specific nucleotide binding of single-stranded RNA by the GLD-1 STAR domain.

Lehmann-Blount KA, Williamson JR.

J Mol Biol. 2005 Feb 11;346(1):91-104. Epub 2004 Dec 19.PMID: 15663930 [PubMed - indexed for MEDLINE]Related articles

RNA tertiary structure and cooperative assembly of a large ribonucleoprotein complex.

Recht MI, Williamson JR.

J Mol Biol. 2004 Nov 19;344(2):395-407.PMID: 15522293 [PubMed - indexed for MEDLINE]Related articles

Interactions between hyperglycemia and hypoxia: implications for diabetic retinopathy.

Nyengaard JR, Ido Y, Kilo C, Williamson JR.

Diabetes. 2004 Nov;53(11):2931-8.PMID: 15504974 [PubMed - indexed for MEDLINE]Related articlesFree article

Enzymatic synthesis and 19F NMR studies of 2-fluoroadenine-substituted RNA.

Scott LG, Geierstanger BH, Williamson JR, Hennig M.

J Am Chem Soc. 2004 Sep 29;126(38):11776-7.PMID: 15382896 [PubMed - indexed for MEDLINE]Related articles

Specificity of the STAR/GSG domain protein Qk1: implications for the regulation of myelination.

Ryder SP, Williamson JR.

RNA. 2004 Sep;10(9):1449-58. Epub 2004 Jul 23.PMID: 15273320 [PubMed - indexed for MEDLINE]Related articlesFree article

Joint X-ray and NMR refinement of the yeast L30e-mRNA complex.

Chao JA, Williamson JR.

Structure. 2004 Jul;12(7):1165-76.PMID: 15242593 [PubMed - indexed for MEDLINE]Related articles

Enthalpy arrays.

Torres FE, Kuhn P, De Bruyker D, Bell AG, Wolkin MV, Peeters E, Williamson JR, Anderson GB, Schmitz GP, Recht MI, Schweizer S, Scott LG, Ho JH, Elrod SA, Schultz PG, Lerner RA, Bruce RH.

Proc Natl Acad Sci U S A. 2004 Jun 29;101(26):9517-22. Epub 2004 Jun 21.PMID: 15210951 [PubMed - indexed for MEDLINE]Related articlesFree article

A three-fluorophore FRET assay for high-throughput screening of small-molecule inhibitors of ribosome assembly.

Klostermeier D, Sears P, Wong CH, Millar DP, Williamson JR.

Nucleic Acids Res. 2004 May 17;32(9):2707-15. Print 2004.PMID: 15148358 [PubMed - indexed for MEDLINE]Related articlesFree article

Preparation of protein gradients through the controlled deposition of protein-nanoparticle conjugates onto functionalized surfaces.

Krämer S, Xie H, Gaff J, Williamson JR, Tkachenko AG, Nouri N, Feldheim DA, Feldheim DL.

J Am Chem Soc. 2004 May 5;126(17):5388-95.PMID: 15113210 [PubMed - indexed for MEDLINE]Related articles

RNA target specificity of the STAR/GSG domain post-transcriptional regulatory protein GLD-1.

Ryder SP, Frater LA, Abramovitz DL, Goodwin EB, Williamson JR.

Nat Struct Mol Biol. 2004 Jan;11(1):20-8. Epub 2003 Dec 29.PMID: 14718919 [PubMed - indexed for MEDLINE]Related articles

NADH augments blood flow in physiologically activated retina and visual cortex.

Ido Y, Chang K, Williamson JR.

Proc Natl Acad Sci U S A. 2004 Jan 13;101(2):653-8. Epub 2004 Jan 2.PMID: 14704275 [PubMed - indexed for MEDLINE]Related articlesFree article

Application of NMR SHAPES screening to an RNA target.

Johnson EC, Feher VA, Peng JW, Moore JM, Williamson JR.

J Am Chem Soc. 2003 Dec 24;125(51):15724-5.PMID: 14677945 [PubMed - indexed for MEDLINE]Related articles