PubMed

Repeatability and Reproducibility in Proteomic Identifications by Liquid Chromatography-Tandem Mass Spectrometry.

Tabb DL, Vega-Montoto L, Rudnick P, Variyath A, Ham AJ, Bunk DM, Kilpatrick L, Billheimer D, Blackman R, Cardasis HL, Carr SA, Clauser KR, Jaffe JD, Kowalski K, Neubert TA, Regnier F, Schilling B, Tegeler T, Wang M, Wang P, Whiteaker JR, Zimmerman L, Fisher SJ, Gibson BW, Kinsinger CR, Mesri M, Rodriguez H, Stein SE, Tempst P, Paulovich A, Liebler DC, Spiegelman C.

J Proteome Res. 2009 Nov 18. [Epub ahead of print]PMID: 19921851 [PubMed - as supplied by publisher]Related articles

Long aftershock sequences within continents and implications for earthquake hazard assessment.

Stein S, Liu M.

Nature. 2009 Nov 5;462(7269):87-9.PMID: 19890328 [PubMed - in process]Related articles

Anastomoses of the lower gastrointestinal tract.

Nandakumar G, Stein SL, Michelassi F.

Nat Rev Gastroenterol Hepatol. 2009 Nov 3. [Epub ahead of print]PMID: 19884894 [PubMed - as supplied by publisher]Related articles

Choosing the best operation for chronic subdural hematoma: a decision analysis.

Lega BC, Danish SF, Malhotra NR, Sonnad SS, Stein SC.

J Neurosurg. 2009 Oct 30. [Epub ahead of print]PMID: 19877806 [PubMed - as supplied by publisher]Related articles

A new PG13-based packaging cell line for stable production of clinical-grade self-inactivating gamma-retroviral vectors using targeted integration.

Loew R, Meyer Y, Kuehlcke K, Gama-Norton L, Wirth D, Hauser H, Stein S, Grez M, Thornhill S, Thrasher A, Baum C, Schambach A.

Gene Ther. 2009 Oct 29. [Epub ahead of print]PMID: 19865181 [PubMed - as supplied by publisher]Related articles

A CPTAC inter-laboratory study characterizing a yeast performance standard for benchmarking LC-MS Platform performance.

Paulovich AG, Billheimer D, Ham AJ, Vega-Montoto LJ, Rudnick PA, Tabb DL, Wang P, Blackman RK, Bunk DM, Cardasis HL, Clauser KR, Kinsinger CR, Schilling B, Tegeler TJ, Variyath AM, Wang M, Whiteaker JR, Zimmerman LJ, Fenyo D, Carr SA, Fisher SJ, Gibson BW, Mesri M, Neubert TA, Reginier FE, Rodriguez H, Spiegelman C, Stein SE, Tempst P, Liebler DC.

Mol Cell Proteomics. 2009 Oct 26. [Epub ahead of print]PMID: 19858499 [PubMed - as supplied by publisher]Related articlesFree article

Performance metrics for liquid chromatography-tandem mass spectrometry systems in proteomic analyses and evaluation by the CPTAC network.

Rudnick PA, Clauser KR, Kilpatrick LE, Tchekhovskoi DV, Neta P, Blonder N, Billheimer DD, Blackman RK, Bunk DM, Cardasis HL, Ham AJ, Jaffe JD, Kinsinger CR, Mesri M, Neubert TA, Schilling B, Tabb DL, Tegeler TJ, Vega-Montoto L, Mulayath Variyath A, Wang M, Wang P, Whiteaker JR, Zimmerman LJ, Carr SA, Fisher SJ, Gibson BW, Paulovich AG, Regnier FE, Rodriguez H, Spiegelman C, Tempst P, Liebler DC, Stein SE.

Mol Cell Proteomics. 2009 Oct 29. [Epub ahead of print]PMID: 19837981 [PubMed - as supplied by publisher]Related articlesFree article

Lapatinib Combined With Letrozole Versus Letrozole and Placebo As First-Line Therapy for Postmenopausal Hormone Receptor-Positive Metastatic Breast Cancer.

Johnston S, Pippen J Jr, Pivot X, Lichinitser M, Sadeghi S, Dieras V, Gomez HL, Romieu G, Manikhas A, Kennedy MJ, Press MF, Maltzman J, Florance A, O'Rourke L, Oliva C, Stein S, Pegram M.

J Clin Oncol. 2009 Nov 20;27(33):5538-5546. Epub 2009 Sep 28.PMID: 19786658 [PubMed - as supplied by publisher]Related articles

Prevalence of mutations in ELANE, GFI1, HAX1, SBDS, WAS and G6PC3 in patients with severe congenital neutropenia.

Xia J, Bolyard AA, Rodger E, Stein S, Aprikyan AA, Dale DC, Link DC.

Br J Haematol. 2009 Nov;147(4):535-42. Epub 2009 Sep 22.PMID: 19775295 [PubMed - in process]Related articles

Relationship of aggressive monitoring and treatment to improved outcomes in severe traumatic brain injury.

Stein SC, Georgoff P, Meghan S, Mirza KL, El Falaky OM.

J Neurosurg. 2009 Sep 11. [Epub ahead of print]PMID: 19747054 [PubMed - as supplied by publisher]Related articles

Serum fibroblast growth factor 21 levels in gestational diabetes mellitus in relation to insulin resistance and dyslipidemia.

Stein S, Stepan H, Kratzsch J, Verlohren M, Verlohren HJ, Drynda K, Lössner U, Blüher M, Stumvoll M, Fasshauer M.

Metabolism. 2009 Aug 20. [Epub ahead of print]PMID: 19699495 [PubMed - as supplied by publisher]Related articles

Application of histograms in evaluation of large collections of gas chromatographic retention indices.

Zenkevich IG, Babushok VI, Linstrom PJ, White EV, Stein SE.

J Chromatogr A. 2009 Sep 18;1216(38):6651-61. Epub 2009 Aug 3.PMID: 19683242 [PubMed]Related articles

NADPH oxidase Nox2 is required for hypoxia-induced mobilization of endothelial progenitor cells.

Schröder K, Kohnen A, Aicher A, Liehn EA, Büchse T, Stein S, Weber C, Dimmeler S, Brandes RP.

Circ Res. 2009 Sep 11;105(6):537-44. Epub 2009 Aug 13.PMID: 19679834 [PubMed - indexed for MEDLINE]Related articles

Multimeric peptide-based PEG nanocarriers with programmable elimination properties.

Gunaseelan S, Pooyan S, Chen P, Samizadeh M, Palombo MS, Stein S, Zhang X, Sinko PJ.

Biomaterials. 2009 Oct;30(29):5649-59. Epub 2009 Jul 31.PMID: 19647312 [PubMed - in process]Related articles

Periodontal and cardiovascular diseases: common inflammatory mediators.

Stein SH, McGrew F, Fine NB, Rawal SY.

J Tenn Dent Assoc. 2009 Spring;89(2):6-10; quiz 10-1. No abstract available. PMID: 19630245 [PubMed - indexed for MEDLINE]Related articles

Heart-infiltrating prominin-1+/CD133+ progenitor cells represent the cellular source of transforming growth factor beta-mediated cardiac fibrosis in experimental autoimmune myocarditis.

Kania G, Blyszczuk P, Stein S, Valaperti A, Germano D, Dirnhofer S, Hunziker L, Matter CM, Eriksson U.

Circ Res. 2009 Aug 28;105(5):462-70. Epub 2009 Jul 23.PMID: 19628793 [PubMed - indexed for MEDLINE]Related articles

Subcutaneous heparin for prophylaxis of venous thromboembolism in deep brain stimulation surgery: evidence from a decision analysis.

Bauman JA, Church E, Halpern CH, Danish SF, Zaghloul KA, Jaggi JL, Stein SC, Baltuch GH.

Neurosurgery. 2009 Aug;65(2):276-80; discussion 280.PMID: 19625905 [PubMed - indexed for MEDLINE]Related articles

The prevalence of shunt-treated hydrocephalus: a mathematical model.

Stein SC, Guo W.

Surg Neurol. 2009 Aug;72(2):131-7.PMID: 19608005 [PubMed - indexed for MEDLINE]Related articles

Conception of an image data base for cell nuclei and geometric algorithms for diagnosis and therapy monitoring.

Schmitt E, Stein S, Hausmann M.

Stud Health Technol Inform. 2009;147:251-6.PMID: 19593063 [PubMed - indexed for MEDLINE]Related articles

Spatial allelic imbalance of BCL2 genes and chromosome 18 territories in nonneoplastic and neoplastic cervical squamous epithelium.

Wiech T, Stein S, Lachenmaier V, Schmitt E, Schwarz-Finsterle J, Wiech E, Hildenbrand G, Werner M, Hausmann M.

Eur Biophys J. 2009 Jul;38(6):793-806. Epub 2009 Jun 3.PMID: 19495739 [PubMed - indexed for MEDLINE]Related articles

Quality of life after hemicraniectomy for traumatic brain injury in adults. A review of the literature.

Danish SF, Barone D, Lega BC, Stein SC.

Neurosurg Focus. 2009 Jun;26(6):E2. Review.PMID: 19485715 [PubMed - indexed for MEDLINE]Related articles

Flexible selection of heterogeneous and unreliable services in large-scale grids.

Stein S, Payne TR, Jennings NR.

Philos Transact A Math Phys Eng Sci. 2009 Jun 28;367(1897):2483-94.PMID: 19451104 [PubMed]Related articles

Bright-field in situ hybridization for HER2 gene amplification in breast cancer using tissue microarrays: correlation between chromogenic (CISH) and automated silver-enhanced (SISH) methods with patient outcome.

Francis GD, Jones MA, Beadle GF, Stein SR.

Diagn Mol Pathol. 2009 Jun;18(2):88-95.PMID: 19430296 [PubMed - indexed for MEDLINE]Related articles

Nonenzymatic, self-elimination degradation mechanism of glutathione.

Deshmukh M, Kutscher H, Stein S, Sinko P.

Chem Biodivers. 2009 Apr;6(4):527-39.PMID: 19353534 [PubMed - indexed for MEDLINE]Related articles

Recommendations from the 2008 International Summit on Proteomics Data Release and Sharing Policy: the Amsterdam principles.

Rodriguez H, Snyder M, Uhlén M, Andrews P, Beavis R, Borchers C, Chalkley RJ, Cho SY, Cottingham K, Dunn M, Dylag T, Edgar R, Hare P, Heck AJ, Hirsch RF, Kennedy K, Kolar P, Kraus HJ, Mallick P, Nesvizhskii A, Ping P, Pontén F, Yang L, Yates JR, Stein SE, Hermjakob H, Kinsinger CR, Apweiler R.

J Proteome Res. 2009 Jul;8(7):3689-92.PMID: 19344107 [PubMed - indexed for MEDLINE]Related articles

Design and evaluation of novel fast forming pilocarpine-loaded ocular hydrogels for sustained pharmacological response.

Anumolu SS, Singh Y, Gao D, Stein S, Sinko PJ.

J Control Release. 2009 Jul 20;137(2):152-9. Epub 2009 Mar 31.PMID: 19341773 [PubMed - indexed for MEDLINE]Related articles

Erythrocyte-bound tissue plasminogen activator is neuroprotective in experimental traumatic brain injury.

Stein SC, Ganguly K, Belfield CM, Xu X, Swanson EW, Chen XH, Browne KD, Johnson VE, Smith DH, LeBold DG, Cines DB, Muzykhantov VR.

J Neurotrauma. 2009 Sep;26(9):1585-92.PMID: 19331516 [PubMed - in process]Related articlesFree article

Time-variable deformation in the New Madrid seismic zone.

Calais E, Stein S.

Science. 2009 Mar 13;323(5920):1442.PMID: 19286546 [PubMed]Related articles

Multifactorial regulation of a hox target gene.

Stöbe P, Stein MA, Habring-Müller A, Bezdan D, Fuchs AL, Hueber SD, Wu H, Lohmann I.

PLoS Genet. 2009 Mar;5(3):e1000412. Epub 2009 Mar 13. Erratum in: PLoS Genet. 2009 Mar;5(3). doi: 10.1371/annotation/f89de76b-0e06-4086-994c-20d64c238a46. Stein, Sokrates M A [corrected to Stein, M A Sokrates]. PMID: 19282966 [PubMed - indexed for MEDLINE]Related articlesFree article

Multisite management study of menorrhagia with abnormal laboratory haemostasis: a prospective crossover study of intranasal desmopressin and oral tranexamic acid.

Kouides PA, Byams VR, Philipp CS, Stein SF, Heit JA, Lukes AS, Skerrette NI, Dowling NF, Evatt BL, Miller CH, Owens S, Kulkarni R.

Br J Haematol. 2009 Apr;145(2):212-20. Epub 2009 Feb 19.PMID: 19236375 [PubMed - indexed for MEDLINE]Related articles

The Drosophila melanogaster PeptideAtlas facilitates the use of peptide data for improved fly proteomics and genome annotation.

Loevenich SN, Brunner E, King NL, Deutsch EW, Stein SE; FlyBase Consortium, Aebersold R, Hafen E.

BMC Bioinformatics. 2009 Feb 11;10:59.PMID: 19210778 [PubMed - indexed for MEDLINE]Related articlesFree article

Single-agent lapatinib for HER2-overexpressing advanced or metastatic breast cancer that progressed on first- or second-line trastuzumab-containing regimens.

Blackwell KL, Pegram MD, Tan-Chiu E, Schwartzberg LS, Arbushites MC, Maltzman JD, Forster JK, Rubin SD, Stein SH, Burstein HJ.

Ann Oncol. 2009 Jun;20(6):1026-31. Epub 2009 Jan 29.PMID: 19179558 [PubMed - indexed for MEDLINE]Related articles

Lapatinib plus capecitabine versus capecitabine alone for HER2+ (ErbB2+) metastatic breast cancer: quality-of-life assessment.

Zhou X, Cella D, Cameron D, Amonkar MM, Segreti A, Stein S, Walker M, Geyer CE.

Breast Cancer Res Treat. 2009 Oct;117(3):577-89. Epub 2009 Jan 20.PMID: 19153829 [PubMed - in process]Related articles

Oxygen-dependent regulation of NDRG1 in human glioblastoma cells in vitro and in vivo.

Said HM, Stein S, Hagemann C, Polat B, Staab A, Anacker J, Schoemig B, Theobald M, Flentje M, Vordermark D.

Oncol Rep. 2009 Jan;21(1):237-46.PMID: 19082468 [PubMed - indexed for MEDLINE]Related articles

Serum levels of angiopoietin-related growth factor are increased in preeclampsia.

Stepan H, Ebert T, Schrey S, Reisenbüchler C, Stein S, Lossner U, Bluher M, Stumvoll M, Kratzsch J, Faber R, Fasshauer M.

Am J Hypertens. 2009 Mar;22(3):314-8. Epub 2008 Dec 4.PMID: 19057519 [PubMed - indexed for MEDLINE]Related articles

Collisional energy dependence of peptide ion fragmentation.

Neta P, Simon-Manso Y, Yang X, Stein SE.

J Am Soc Mass Spectrom. 2009 Mar;20(3):469-76. Epub 2008 Nov 21.PMID: 19056297 [PubMed - indexed for MEDLINE]Related articles

uPA modulates the age-dependent effect of brain injury on cerebral hemodynamics through LRP and ERK MAPK.

Armstead WM, Cines DB, Bdeir KH, Bdeir Y, Stein SC, Higazi AA.

J Cereb Blood Flow Metab. 2009 Mar;29(3):524-33. Epub 2008 Dec 3.PMID: 19050721 [PubMed - indexed for MEDLINE]Related articles

HER-2 gene amplification, HER-2 and epidermal growth factor receptor mRNA and protein expression, and lapatinib efficacy in women with metastatic breast cancer.

Press MF, Finn RS, Cameron D, Di Leo A, Geyer CE, Villalobos IE, Santiago A, Guzman R, Gasparyan A, Ma Y, Danenberg K, Martin AM, Williams L, Oliva C, Stein S, Gagnon R, Arbushites M, Koehler MT.

Clin Cancer Res. 2008 Dec 1;14(23):7861-70.PMID: 19047115 [PubMed - indexed for MEDLINE]Related articles

Meta-analysis of cranial CT scans in children. A mathematical model to predict radiation-induced tumors.

Stein SC, Hurst RW, Sonnad SS.

Pediatr Neurosurg. 2008;44(6):448-57. Epub 2008 Nov 17.PMID: 19018153 [PubMed - indexed for MEDLINE]Related articles

Posttranscriptional regulation of the breast cancer susceptibility gene BRCA1 by the RNA binding protein HuR.

Saunus JM, French JD, Edwards SL, Beveridge DJ, Hatchell EC, Wagner SA, Stein SR, Davidson A, Simpson KJ, Francis GD, Leedman PJ, Brown MA.

Cancer Res. 2008 Nov 15;68(22):9469-78.PMID: 19010922 [PubMed - indexed for MEDLINE]Related articlesFree article

Relationship between effects on time-to-disease progression and overall survival in studies of metastatic breast cancer.

Sherrill B, Amonkar M, Wu Y, Hirst C, Stein S, Walker M, Cuzick J.

Br J Cancer. 2008 Nov 18;99(10):1572-8. Epub 2008 Oct 28. Review.PMID: 19002178 [PubMed - indexed for MEDLINE]Related articlesFree article

Prevalence of cervical spinal injury in trauma.

Milby AH, Halpern CH, Guo W, Stein SC.

Neurosurg Focus. 2008;25(5):E10. Review.PMID: 18980470 [PubMed - indexed for MEDLINE]Related articles

Phase III, double-blind, randomized study comparing lapatinib plus paclitaxel with placebo plus paclitaxel as first-line treatment for metastatic breast cancer.

Di Leo A, Gomez HL, Aziz Z, Zvirbule Z, Bines J, Arbushites MC, Guerrera SF, Koehler M, Oliva C, Stein SH, Williams LS, Dering J, Finn RS, Press MF.

J Clin Oncol. 2008 Dec 1;26(34):5544-52. Epub 2008 Oct 27. Erratum in: J Clin Oncol. 2009 Apr 10;27(11):1923. PMID: 18955454 [PubMed - indexed for MEDLINE]Related articles

Microphthalmia with linear skin defects: a case report and review.

Sharma VM, Ruiz de Luzuriaga AM, Waggoner D, Greenwald M, Stein SL.

Pediatr Dermatol. 2008 Sep-Oct;25(5):548-52. Review.PMID: 18950397 [PubMed - indexed for MEDLINE]Related articles

Sustained persistence of transplanted proangiogenic cells contributes to neovascularization and cardiac function after ischemia.

Ziebart T, Yoon CH, Trepels T, Wietelmann A, Braun T, Kiessling F, Stein S, Grez M, Ihling C, Muhly-Reinholz M, Carmona G, Urbich C, Zeiher AM, Dimmeler S.

Circ Res. 2008 Nov 21;103(11):1327-34. Epub 2008 Oct 16.PMID: 18927463 [PubMed - indexed for MEDLINE]Related articles

Serum levels of the adipokine FGF21 depend on renal function.

Stein S, Bachmann A, Lössner U, Kratzsch J, Blüher M, Stumvoll M, Fasshauer M.

Diabetes Care. 2009 Jan;32(1):126-8. Epub 2008 Oct 7.PMID: 18840768 [PubMed - in process]Related articlesFree article

Conduct disorder in girls: neighborhoods, family characteristics, and parenting behaviors.

Pajer K, Stein S, Tritt K, Chang CN, Wang W, Gardner W.

Child Adolesc Psychiatry Ment Health. 2008 Oct 6;2(1):28.PMID: 18837974 [PubMed - in process]Related articlesFree article

Building consensus spectral libraries for peptide identification in proteomics.

Lam H, Deutsch EW, Eddes JS, Eng JK, Stein SE, Aebersold R.

Nat Methods. 2008 Oct;5(10):873-5. Epub 2008 Sep 21.PMID: 18806791 [PubMed - indexed for MEDLINE]Related articlesFree article

Transgene optimization significantly improves SIN vector titers, gp91phox expression and reconstitution of superoxide production in X-CGD cells.

Moreno-Carranza B, Gentsch M, Stein S, Schambach A, Santilli G, Rudolf E, Ryser MF, Haria S, Thrasher AJ, Baum C, Brenner S, Grez M.

Gene Ther. 2009 Jan;16(1):111-8. Epub 2008 Sep 11.PMID: 18784749 [PubMed - indexed for MEDLINE]Related articles

Q-TWiST analysis of lapatinib combined with capecitabine for the treatment of metastatic breast cancer.

Sherrill B, Amonkar MM, Stein S, Walker M, Geyer C, Cameron D.

Br J Cancer. 2008 Sep 2;99(5):711-5. Epub 2008 Aug 19.PMID: 18728660 [PubMed - indexed for MEDLINE]Related articlesFree article