PubMed

Sonic hedgehog is involved in formation of the ventral optic cup by limiting Bmp4 expression to the dorsal domain.

Zhao L, Saitsu H, Sun X, Shiota K, Ishibashi M.

Mech Dev. 2009 Oct 23. [Epub ahead of print]PMID: 19854269 [PubMed - as supplied by publisher]Related articles

Mechanism of skull suture maintenance and interdigitation.

Miura T, Perlyn CA, Kinboshi M, Ogihara N, Kobayashi-Miura M, Morriss-Kay GM, Shiota K.

J Anat. 2009 Oct 6. [Epub ahead of print]PMID: 19811566 [PubMed - as supplied by publisher]Related articles

Terminology of developmental abnormalities in common laboratory mammals (version 2).

Makris SL, Solomon HM, Clark R, Shiota K, Barbellion S, Buschmann J, Ema M, Fujiwara M, Grote K, Hazelden KP, Hew KW, Horimoto M, Ooshima Y, Parkinson M, Wise LD.

Reprod Toxicol. 2009 Nov;28(3):371-434. Epub 2009 Sep 1.PMID: 19729062 [PubMed - indexed for MEDLINE]Related articles

Terminology of developmental abnormalities in common laboratory mammals (Version 2).

Makris SL, Solomon HM, Clark R, Shiota K, Barbellion S, Buschmann J, Ema M, Fujiwara M, Grote K, Hazelden KP, Hew KW, Horimoto M, Ooshima Y, Parkinson M, Wise LD.

Birth Defects Res B Dev Reprod Toxicol. 2009 Aug;86(4):227-327. Review.PMID: 19708059 [PubMed - indexed for MEDLINE]Related articles

Establishment of trophoblast stem cell lines from somatic cell nuclear-transferred embryos.

Oda M, Tanaka S, Yamazaki Y, Ohta H, Iwatani M, Suzuki M, Ohgane J, Hattori N, Yanagimachi R, Wakayama T, Shiota K.

Proc Natl Acad Sci U S A. 2009 Sep 22;106(38):16293-7. Epub 2009 Aug 24.PMID: 19706390 [PubMed - indexed for MEDLINE]Related articles

Human cardiac development in the first trimester: a high-resolution magnetic resonance imaging and episcopic fluorescence image capture atlas.

Dhanantwari P, Lee E, Krishnan A, Samtani R, Yamada S, Anderson S, Lockett E, Donofrio M, Shiota K, Leatherbury L, Lo CW.

Circulation. 2009 Jul 28;120(4):343-51. No abstract available. PMID: 19635979 [PubMed - indexed for MEDLINE]Related articles

Variability in human embryonic development and its implications for the susceptibility to environmental teratogenesis.

Shiota K.

Birth Defects Res A Clin Mol Teratol. 2009 Aug;85(8):661-6.PMID: 19606457 [PubMed - in process]Related articles

Expression of the peroxisome proliferator activated receptor gamma gene is repressed by DNA methylation in visceral adipose tissue of mouse models of diabetes.

Fujiki K, Kano F, Shiota K, Murata M.

BMC Biol. 2009 Jul 10;7:38.PMID: 19589179 [PubMed - indexed for MEDLINE]Related articlesFree article

Intrauterine environment-genome interaction and children's development (3): Assisted reproductive technologies and developmental disorders.

Shiota K, Yamada S.

J Toxicol Sci. 2009;34 Suppl 2:SP287-91. Review.PMID: 19571482 [PubMed - indexed for MEDLINE]Related articlesFree article

Isolated levocardia: prenatal diagnosis and management.

Katsuya S, Yamada S, Ukita M, Nishimura H, Matsumura N, Fukuhara K, Sato Y, Shiota K, Konishi I.

Congenit Anom (Kyoto). 2009 Jun;49(2):56-60.PMID: 19489955 [PubMed - indexed for MEDLINE]Related articles

[A case of synchronous hepatocellular carcinoma successfully treated by S-1 and cisplatin (CDDP) as neoadjuvant chemotherapy for gastric cancer]

Oka T, Onoda Y, Ohashi R, Izumi S, Suzuka I, Shiota K.

Gan To Kagaku Ryoho. 2009 May;36(5):863-6. Japanese. PMID: 19461196 [PubMed - indexed for MEDLINE]Related articles

Interplay between DNA methylation, histone modification and chromatin remodeling in stem cells and during development.

Ikegami K, Ohgane J, Tanaka S, Yagi S, Shiota K.

Int J Dev Biol. 2009;53(2-3):203-14. Review.PMID: 19412882 [PubMed - indexed for MEDLINE]Related articlesFree article

An epigenetic mechanism regulates germ cell-specific expression of the porcine Deleted in Azoospermia-Like (DAZL) gene.

Linher K, Cheung Q, Baker P, Bedecarrats G, Shiota K, Li J.

Differentiation. 2009 Apr;77(4):335-49. Epub 2008 Nov 30.PMID: 19281782 [PubMed - indexed for MEDLINE]Related articles

[Cisplatin and S-1 combination therapy after reduction surgery for stage IV gastric cancer]

Taniwaki S, Saruwatari A, Yoshida T, Mizoguchi A, Kitasato Y, Kitamura T, Hidaka A, Shiota K, Kuroda H, Tanaka M, Higashi T, Iwanaga Y, Ogata Y.

Gan To Kagaku Ryoho. 2009 Feb;36(2):279-82. Japanese. PMID: 19223745 [PubMed - indexed for MEDLINE]Related articles

Aberrant DNA methylation status in human uterine leiomyoma.

Yamagata Y, Maekawa R, Asada H, Taketani T, Tamura I, Tamura H, Ogane J, Hattori N, Shiota K, Sugino N.

Mol Hum Reprod. 2009 Apr;15(4):259-67. Epub 2009 Feb 14.PMID: 19218588 [PubMed - indexed for MEDLINE]Related articles

The cyst-branch difference in developing chick lung results from a different morphogen diffusion coefficient.

Miura T, Hartmann D, Kinboshi M, Komada M, Ishibashi M, Shiota K.

Mech Dev. 2009 Mar-Apr;126(3-4):160-72. Epub 2008 Dec 6.PMID: 19073251 [PubMed - indexed for MEDLINE]Related articles

Analysis of DNA methylation and histone modification profiles of liver-specific transporters.

Imai S, Kikuchi R, Kusuhara H, Yagi S, Shiota K, Sugiyama Y.

Mol Pharmacol. 2009 Mar;75(3):568-76. Epub 2008 Dec 1.PMID: 19047482 [PubMed - indexed for MEDLINE]Related articles

Cleft palate caused by perfluorooctane sulfonate is caused mainly by extrinsic factors.

Era S, Harada KH, Toyoshima M, Inoue K, Minata M, Saito N, Takigawa T, Shiota K, Koizumi A.

Toxicology. 2009 Feb 4;256(1-2):42-7. Epub 2008 Nov 12.PMID: 19041924 [PubMed - indexed for MEDLINE]Related articles

Neonatal exposure to diethylstilbestrol alters expression of DNA methyltransferases and methylation of genomic DNA in the mouse uterus.

Sato K, Fukata H, Kogo Y, Ohgane J, Shiota K, Mori C.

Endocr J. 2009 Mar;56(1):131-9. Epub 2008 Nov 8.PMID: 18997445 [PubMed - indexed for MEDLINE]Related articlesFree article

DNA methylation profile of tissue-dependent and differentially methylated regions (T-DMRs) in mouse promoter regions demonstrating tissue-specific gene expression.

Yagi S, Hirabayashi K, Sato S, Li W, Takahashi Y, Hirakawa T, Wu G, Hattori N, Hattori N, Ohgane J, Tanaka S, Liu XS, Shiota K.

Genome Res. 2008 Dec;18(12):1969-78. Epub 2008 Oct 29.PMID: 18971312 [PubMed - indexed for MEDLINE]Related articlesFree article

Retinoic acid down-regulates Tbx1 expression and induces abnormal differentiation of tongue muscles in fetal mice.

Okano J, Sakai Y, Shiota K.

Dev Dyn. 2008 Oct;237(10):3059-70.PMID: 18816858 [PubMed - indexed for MEDLINE]Related articlesFree article

DNA methylation changes during cleft palate formation induced by retinoic acid in mice.

Kuriyama M, Udagawa A, Yoshimoto S, Ichinose M, Sato K, Yamazaki K, Matsuno Y, Shiota K, Mori C.

Cleft Palate Craniofac J. 2008 Sep;45(5):545-51. Epub 2008 Apr 11.PMID: 18788878 [PubMed - indexed for MEDLINE]Related articles

Potential link between estrogen receptor-alpha gene hypomethylation and uterine fibroid formation.

Asada H, Yamagata Y, Taketani T, Matsuoka A, Tamura H, Hattori N, Ohgane J, Hattori N, Shiota K, Sugino N.

Mol Hum Reprod. 2008 Sep;14(9):539-45. Epub 2008 Aug 13.PMID: 18701604 [PubMed - indexed for MEDLINE]Related articlesFree article

Ectopic dermal ridge configurations on the interdigital webbings and postaxial marginal portion of the hindlimb in Hammertoe mutant mice (Hm).

Kimura S, Schaumann BA, Shiota K.

J Morphol. 2008 Oct;269(10):1214-22.PMID: 18626945 [PubMed - indexed for MEDLINE]Related articles

Hedgehog signaling is involved in development of the neocortex.

Komada M, Saitsu H, Kinboshi M, Miura T, Shiota K, Ishibashi M.

Development. 2008 Aug;135(16):2717-27. Epub 2008 Jul 9.PMID: 18614579 [PubMed - indexed for MEDLINE]Related articlesFree article

Chloride chemical form in various types of fly ash.

Zhu F, Takaoka M, Shiota K, Oshita K, Kitajima Y.

Environ Sci Technol. 2008 Jun 1;42(11):3932-7.PMID: 18589947 [PubMed - indexed for MEDLINE]Related articles

Three-dimensional ontogenetic shape changes in the human cranium during the fetal period.

Morimoto N, Ogihara N, Katayama K, Shiota K.

J Anat. 2008 May;212(5):627-35.PMID: 18430090 [PubMed - indexed for MEDLINE]Related articles

Fetal ethanol exposure activates protein kinase A and impairs Shh expression in prechordal mesendoderm cells in the pathogenesis of holoprosencephaly.

Aoto K, Shikata Y, Higashiyama D, Shiota K, Motoyama J.

Birth Defects Res A Clin Mol Teratol. 2008 Apr;82(4):224-31.PMID: 18338389 [PubMed - indexed for MEDLINE]Related articles

Epigenetics: the study of embryonic stem cells by restriction landmark genomic scanning.

Hattori N, Shiota K.

FEBS J. 2008 Apr;275(8):1624-30. Epub 2008 Mar 7. Review.PMID: 18331346 [PubMed - indexed for MEDLINE]Related articles

Inhibition of RuBisCO cloned from Thermosynechococcus vulcanus and expressed in Escherichia coli with compounds predicted by Molecular Operation Environment (MOE).

Iwaki T, Shiota K, Al-Taweel K, Kobayashi D, Kobayashi A, Suzuki K, Yui T, Wadano A.

J Biosci Bioeng. 2008 Jan;105(1):26-33.PMID: 18295716 [PubMed - indexed for MEDLINE]Related articlesFree article

Expression of Fgf15 is regulated by both activator and repressor forms of Gli2 in vitro.

Komada M, Saitsu H, Shiota K, Ishibashi M.

Biochem Biophys Res Commun. 2008 May 2;369(2):350-6. Epub 2008 Feb 13.PMID: 18279667 [PubMed - indexed for MEDLINE]Related articles

Involvement of the axially condensed tail bud mesenchyme in normal and abnormal human posterior neural tube development.

Saitsu H, Shiota K.

Congenit Anom (Kyoto). 2008 Mar;48(1):1-6. Review.PMID: 18230116 [PubMed - indexed for MEDLINE]Related articles

DNA hypomethylation circuit of the mouse oocyte-specific histone H1foo gene in female germ cell lineage.

Maeda C, Sato S, Hattori N, Tanaka S, Yagi S, Shiota K.

Biol Reprod. 2008 May;78(5):816-21. Epub 2008 Jan 9.PMID: 18184919 [PubMed - indexed for MEDLINE]Related articlesFree article

A new class of tissue-specifically methylated regions involving entire CpG islands in the mouse.

Suzuki M, Sato S, Arai Y, Shinohara T, Tanaka S, Greally JM, Hattori N, Shiota K.

Genes Cells. 2007 Dec;12(12):1305-14.PMID: 18076568 [PubMed - indexed for MEDLINE]Related articles

Sequential changes in genome-wide DNA methylation status during adipocyte differentiation.

Sakamoto H, Kogo Y, Ohgane J, Hattori N, Yagi S, Tanaka S, Shiota K.

Biochem Biophys Res Commun. 2008 Feb 8;366(2):360-6. Epub 2007 Dec 4.PMID: 18062916 [PubMed - indexed for MEDLINE]Related articles

Imaging of a large collection of human embryo using a super-parallel MR microscope.

Matsuda Y, Ono S, Otake Y, Handa S, Kose K, Haishi T, Yamada S, Uwabe C, Shiota K.

Magn Reson Med Sci. 2007;6(3):139-46.PMID: 18037794 [PubMed - indexed for MEDLINE]Related articlesFree article

Expression dynamics of the LIM-homeobox genes, Lhx1 and Lhx9, in the diencephalon during chick development.

Sun X, Saitsu H, Shiota K, Ishibashi M.

Int J Dev Biol. 2008;52(1):33-41.PMID: 18033670 [PubMed - indexed for MEDLINE]Related articlesFree article

Epigenetics: the DNA methylation profile of tissue-dependent and differentially methylated regions in cells.

Ohgane J, Yagi S, Shiota K.

Placenta. 2008 Mar;29 Suppl A:S29-35. Epub 2007 Nov 26. Review.PMID: 18031808 [PubMed - indexed for MEDLINE]Related articles

Embryogenesis of holoprosencephaly.

Shiota K, Yamada S, Komada M, Ishibashi M.

Am J Med Genet A. 2007 Dec 15;143A(24):3079-87. Review.PMID: 17963261 [PubMed - indexed for MEDLINE]Related articles

Visualization of human prenatal development by magnetic resonance imaging (MRI).

Shiota K, Yamada S, Nakatsu-Komatsu T, Uwabe C, Kose K, Matsuda Y, Haishi T, Mizuta S, Matsuda T.

Am J Med Genet A. 2007 Dec 15;143A(24):3121-6.PMID: 17963260 [PubMed - indexed for MEDLINE]Related articles

DNA methylation errors in cloned mice disappear with advancement of aging.

Senda S, Wakayama T, Arai Y, Yamazaki Y, Ohgane J, Tanaka S, Hattori N, Yanagimachi R, Shiota K.

Cloning Stem Cells. 2007 Fall;9(3):293-302.PMID: 17907940 [PubMed - indexed for MEDLINE]Related articles

Cell type-specific methylation profiles occurring disproportionately in CpG-less regions that delineate developmental similarity.

Sakamoto H, Suzuki M, Abe T, Hosoyama T, Himeno E, Tanaka S, Greally JM, Hattori N, Yagi S, Shiota K.

Genes Cells. 2007 Oct;12(10):1123-32.PMID: 17903172 [PubMed - indexed for MEDLINE]Related articles

Three-dimensional analysis of inner ear development in human embryos.

Yasuda M, Yamada S, Uwabe C, Shiota K, Yasuda Y.

Anat Sci Int. 2007 Sep;82(3):156-63.PMID: 17867342 [PubMed - indexed for MEDLINE]Related articles

Regulation of tissue-specific expression of the human and mouse urate transporter 1 gene by hepatocyte nuclear factor 1 alpha/beta and DNA methylation.

Kikuchi R, Kusuhara H, Hattori N, Kim I, Shiota K, Gonzalez FJ, Sugiyama Y.

Mol Pharmacol. 2007 Dec;72(6):1619-25. Epub 2007 Sep 13.PMID: 17855651 [PubMed - indexed for MEDLINE]Related articlesFree article

Expression of CCN1 (CYR61) in developing, normal, and diseased human kidney.

Sawai K, Mukoyama M, Mori K, Kasahara M, Koshikawa M, Yokoi H, Yoshioka T, Ogawa Y, Sugawara A, Nishiyama H, Yamada S, Kuwahara T, Saleem MA, Shiota K, Ogawa O, Miyazato M, Kangawa K, Nakao K.

Am J Physiol Renal Physiol. 2007 Oct;293(4):F1363-72. Epub 2007 Aug 15.PMID: 17699553 [PubMed - indexed for MEDLINE]Related articlesFree article

Computerized three-dimensional analysis of the heart and great vessels in normal and holoprosencephalic human embryos.

Yamada S, Itoh H, Uwabe C, Fujihara S, Nishibori C, Wada M, Fujii S, Shiota K.

Anat Rec (Hoboken). 2007 Mar;290(3):259-67.PMID: 17525942 [PubMed - indexed for MEDLINE]Related articlesFree article

Aberrant differentiation of the axially condensed tail bud mesenchyme in human embryos with lumbosacral myeloschisis.

Saitsu H, Yamada S, Uwabe C, Ishibashi M, Shiota K.

Anat Rec (Hoboken). 2007 Mar;290(3):251-8.PMID: 17525941 [PubMed - indexed for MEDLINE]Related articlesFree article

A standardized nomenclature for the mouse and rat prolactin superfamilies.

Soares MJ, Alam SM, Duckworth ML, Horseman ND, Konno T, Linzer DI, Maltais LJ, Nilsen-Hamilton M, Shiota K, Smith JR, Wallis M.

Mamm Genome. 2007 Mar;18(3):154-6. Epub 2007 May 3. No abstract available. PMID: 17476555 [PubMed - indexed for MEDLINE]Related articles

Involvement of apoptotic cell death and cell cycle perturbation in retinoic acid-induced cleft palate in mice.

Okano J, Suzuki S, Shiota K.

Toxicol Appl Pharmacol. 2007 May 15;221(1):42-56. Epub 2007 Mar 12.PMID: 17442359 [PubMed - indexed for MEDLINE]Related articles

Sequential developmental changes in holoprosencephalic mouse embryos exposed to ethanol during the gastrulation period.

Higashiyama D, Saitsu H, Komada M, Takigawa T, Ishibashi M, Shiota K.

Birth Defects Res A Clin Mol Teratol. 2007 Jul;79(7):513-23.PMID: 17393481 [PubMed - indexed for MEDLINE]Related articles