PubMed

Gene transcript abundance profiles distinguish Kawasaki disease from adenovirus infection.

Popper SJ, Watson VE, Shimizu C, Kanegaye JT, Burns JC, Relman DA.

J Infect Dis. 2009 Aug 15;200(4):657-66.PMID: 19583510 [PubMed - indexed for MEDLINE]Related articles

Majority rules? Tallying the microbial census in an abscess by means of molecular methods.

Digiulio DB, Relman DA.

Clin Infect Dis. 2009 May 1;48(9):1179-81. No abstract available. PMID: 19335163 [PubMed - indexed for MEDLINE]Related articles

Natural-host animal models indicate functional interchangeability between the filamentous haemagglutinins of Bordetella pertussis and Bordetella bronchiseptica and reveal a role for the mature C-terminal domain, but not the RGD motif, during infection.

Julio SM, Inatsuka CS, Mazar J, Dieterich C, Relman DA, Cotter PA.

Mol Microbiol. 2009 Mar;71(6):1574-90. Epub 2009 Feb 10.PMID: 19220744 [PubMed - indexed for MEDLINE]Related articles

Cross-talk in the gut.

Dinalo JE, Relman DA.

Genome Biol. 2009;10(1):203. Epub 2009 Jan 23. Review.PMID: 19216729 [PubMed - indexed for MEDLINE]Related articles

'Til death do us part': coming to terms with symbiotic relationships. Forward.

Relman DA.

Nat Rev Microbiol. 2008 Oct;6(10):721-4.PMID: 19086265 [PubMed - indexed for MEDLINE]Related articles

Modulation of the NF-kappaB pathway by Bordetella pertussis filamentous hemagglutinin.

Abramson T, Kedem H, Relman DA.

PLoS One. 2008;3(11):e3825. Epub 2008 Nov 27.PMID: 19043589 [PubMed - indexed for MEDLINE]Related articlesFree article

Exploring microbial diversity and taxonomy using SSU rRNA hypervariable tag sequencing.

Huse SM, Dethlefsen L, Huber JA, Welch DM, Relman DA, Sogin ML.

PLoS Genet. 2008 Nov;4(11):e1000255. Epub 2008 Nov 21.PMID: 19023400 [PubMed - indexed for MEDLINE]Related articlesFree article

The pervasive effects of an antibiotic on the human gut microbiota, as revealed by deep 16S rRNA sequencing.

Dethlefsen L, Huse S, Sogin ML, Relman DA.

PLoS Biol. 2008 Nov 18;6(11):e280.PMID: 19018661 [PubMed - indexed for MEDLINE]Related articlesFree article

Microbial prevalence, diversity and abundance in amniotic fluid during preterm labor: a molecular and culture-based investigation.

DiGiulio DB, Romero R, Amogan HP, Kusanovic JP, Bik EM, Gotsch F, Kim CJ, Erez O, Edwin S, Relman DA.

PLoS One. 2008 Aug 26;3(8):e3056.PMID: 18725970 [PubMed - indexed for MEDLINE]Related articlesFree article

Comparative analysis of viral gene expression programs during poxvirus infection: a transcriptional map of the vaccinia and monkeypox genomes.

Rubins KH, Hensley LE, Bell GW, Wang C, Lefkowitz EJ, Brown PO, Relman DA.

PLoS One. 2008 Jul 9;3(7):e2628.PMID: 18612436 [PubMed - indexed for MEDLINE]Related articlesFree article

Microbiology in the post-genomic era.

Medini D, Serruto D, Parkhill J, Relman DA, Donati C, Moxon R, Falkow S, Rappuoli R.

Nat Rev Microbiol. 2008 Jun;6(6):419-30. Epub 2008 May 13. Review.PMID: 18475305 [PubMed - indexed for MEDLINE]Related articles

Learning to appreciate our differences.

Relman DA.

J Infect Dis. 2008 Jul 1;198(1):4-5. No abstract available. PMID: 18454681 [PubMed - indexed for MEDLINE]Related articles

Linking microbial phylogeny to metabolic activity at the single-cell level by using enhanced element labeling-catalyzed reporter deposition fluorescence in situ hybridization (EL-FISH) and NanoSIMS.

Behrens S, Lösekann T, Pett-Ridge J, Weber PK, Ng WO, Stevenson BS, Hutcheon ID, Relman DA, Spormann AM.

Appl Environ Microbiol. 2008 May;74(10):3143-50. Epub 2008 Mar 21.PMID: 18359832 [PubMed - indexed for MEDLINE]Related articlesFree article

Gene-expression patterns reveal underlying biological processes in Kawasaki disease.

Popper SJ, Shimizu C, Shike H, Kanegaye JT, Newburger JW, Sundel RP, Brown PO, Burns JC, Relman DA.

Genome Biol. 2007;8(12):R261.PMID: 18067656 [PubMed - indexed for MEDLINE]Related articlesFree article

Building a better virus trap.

Long CD, Turner-Shelef K, Relman DA.

Trends Biotechnol. 2007 Dec;25(12):535-8. Epub 2007 Nov 8.PMID: 17997180 [PubMed - indexed for MEDLINE]Related articles

Host transmission of Salmonella enterica serovar Typhimurium is controlled by virulence factors and indigenous intestinal microbiota.

Lawley TD, Bouley DM, Hoy YE, Gerke C, Relman DA, Monack DM.

Infect Immun. 2008 Jan;76(1):403-16. Epub 2007 Oct 29.PMID: 17967858 [PubMed - indexed for MEDLINE]Related articlesFree article

An ecological and evolutionary perspective on human-microbe mutualism and disease.

Dethlefsen L, McFall-Ngai M, Relman DA.

Nature. 2007 Oct 18;449(7164):811-8. Review.PMID: 17943117 [PubMed - indexed for MEDLINE]Related articles

The temporal program of peripheral blood gene expression in the response of nonhuman primates to Ebola hemorrhagic fever.

Rubins KH, Hensley LE, Wahl-Jensen V, Daddario DiCaprio KM, Young HA, Reed DS, Jahrling PB, Brown PO, Relman DA, Geisbert TW.

Genome Biol. 2007;8(8):R174.PMID: 17725815 [PubMed - indexed for MEDLINE]Related articlesFree article

Dissecting biological "dark matter" with single-cell genetic analysis of rare and uncultivated TM7 microbes from the human mouth.

Marcy Y, Ouverney C, Bik EM, Lösekann T, Ivanova N, Martin HG, Szeto E, Platt D, Hugenholtz P, Relman DA, Quake SR.

Proc Natl Acad Sci U S A. 2007 Jul 17;104(29):11889-94. Epub 2007 Jul 9.PMID: 17620602 [PubMed - indexed for MEDLINE]Related articlesFree article

Development of the human infant intestinal microbiota.

Palmer C, Bik EM, DiGiulio DB, Relman DA, Brown PO.

PLoS Biol. 2007 Jul;5(7):e177. Epub 2007 Jun 26.PMID: 17594176 [PubMed - indexed for MEDLINE]Related articlesFree article

Phase variation and microevolution at homopolymeric tracts in Bordetella pertussis.

Gogol EB, Cummings CA, Burns RC, Relman DA.

BMC Genomics. 2007 May 17;8:122.PMID: 17509142 [PubMed - indexed for MEDLINE]Related articlesFree article

Patterns of host genome-wide gene transcript abundance in the peripheral blood of patients with acute dengue hemorrhagic fever.

Simmons CP, Popper S, Dolocek C, Chau TN, Griffiths M, Dung NT, Long TH, Hoang DM, Chau NV, Thao le TT, Hien TT, Relman DA, Farrar J.

J Infect Dis. 2007 Apr 15;195(8):1097-107. Epub 2007 Mar 5.PMID: 17357045 [PubMed - indexed for MEDLINE]Related articles

The importance of individuals and scale: moving towards single cell microbiology.

Dethlefsen L, Relman DA.

Environ Microbiol. 2007 Jan;9(1):8-10. No abstract available. PMID: 17227405 [PubMed - indexed for MEDLINE]Related articles

The role of microbes in Crohn's disease.

Eckburg PB, Relman DA.

Clin Infect Dis. 2007 Jan 15;44(2):256-62. Epub 2006 Dec 12. Review.PMID: 17173227 [PubMed - indexed for MEDLINE]Related articles

Characterization of a highly conserved island in the otherwise divergent Bordetella holmesii and Bordetella pertussis genomes.

Diavatopoulos DA, Cummings CA, van der Heide HG, van Gent M, Liew S, Relman DA, Mooi FR.

J Bacteriol. 2006 Dec;188(24):8385-94. Epub 2006 Oct 13.PMID: 17041054 [PubMed - indexed for MEDLINE]Related articlesFree article

Growth phase- and nutrient limitation-associated transcript abundance regulation in Bordetella pertussis.

Nakamura MM, Liew SY, Cummings CA, Brinig MM, Dieterich C, Relman DA.

Infect Immun. 2006 Oct;74(10):5537-48.PMID: 16988229 [PubMed - indexed for MEDLINE]Related articlesFree article

Genomic features of Bordetella parapertussis clades with distinct host species specificity.

Brinig MM, Register KB, Ackermann MR, Relman DA.

Genome Biol. 2006;7(9):R81.PMID: 16956413 [PubMed - indexed for MEDLINE]Related articlesFree article

Assembly of the human intestinal microbiota.

Dethlefsen L, Eckburg PB, Bik EM, Relman DA.

Trends Ecol Evol. 2006 Sep;21(9):517-23. Epub 2006 Jul 3. Review.PMID: 16820245 [PubMed - indexed for MEDLINE]Related articles

Metagenomic analysis of the human distal gut microbiome.

Gill SR, Pop M, Deboy RT, Eckburg PB, Turnbaugh PJ, Samuel BS, Gordon JI, Relman DA, Fraser-Liggett CM, Nelson KE.

Science. 2006 Jun 2;312(5778):1355-9.PMID: 16741115 [PubMed - indexed for MEDLINE]Related articlesFree article

Early days: genomics and human responses to infection.

Liu M, Popper SJ, Rubins KH, Relman DA.

Curr Opin Microbiol. 2006 Jun;9(3):312-9. Epub 2006 May 6. Review.PMID: 16679048 [PubMed - indexed for MEDLINE]Related articles

In search of biosecurity.

Relman DA, Choffnes E, Lemon SM.

Science. 2006 Mar 31;311(5769):1835. No abstract available. PMID: 16574824 [PubMed - indexed for MEDLINE]Related articlesFree article

Significant gene order and expression differences in Bordetella pertussis despite limited gene content variation.

Brinig MM, Cummings CA, Sanden GN, Stefanelli P, Lawrence A, Relman DA.

J Bacteriol. 2006 Apr;188(7):2375-82.PMID: 16547023 [PubMed - indexed for MEDLINE]Related articlesFree article

Species- and strain-specific control of a complex, flexible regulon by Bordetella BvgAS.

Cummings CA, Bootsma HJ, Relman DA, Miller JF.

J Bacteriol. 2006 Mar;188(5):1775-85.PMID: 16484188 [PubMed - indexed for MEDLINE]Related articlesFree article

Bioterrorism--preparing to fight the next war.

Relman DA.

N Engl J Med. 2006 Jan 12;354(2):113-5. No abstract available. PMID: 16407505 [PubMed - indexed for MEDLINE]Related articles

Rapid quantitative profiling of complex microbial populations.

Palmer C, Bik EM, Eisen MB, Eckburg PB, Sana TR, Wolber PK, Relman DA, Brown PO.

Nucleic Acids Res. 2006 Jan 10;34(1):e5.PMID: 16407321 [PubMed - indexed for MEDLINE]Related articlesFree article

Molecular analysis of the bacterial microbiota in the human stomach.

Bik EM, Eckburg PB, Gill SR, Nelson KE, Purdom EA, Francois F, Perez-Perez G, Blaser MJ, Relman DA.

Proc Natl Acad Sci U S A. 2006 Jan 17;103(3):732-7. Epub 2006 Jan 4.PMID: 16407106 [PubMed - indexed for MEDLINE]Related articlesFree article

Bordetella pertussis, the causative agent of whooping cough, evolved from a distinct, human-associated lineage of B. bronchiseptica.

Diavatopoulos DA, Cummings CA, Schouls LM, Brinig MM, Relman DA, Mooi FR.

PLoS Pathog. 2005 Dec;1(4):e45. Epub 2005 Dec 30.PMID: 16389302 [PubMed]Related articlesFree article

Genomewide analysis of the host response to malaria in Kenyan children.

Griffiths MJ, Shafi MJ, Popper SJ, Hemingway CA, Kortok MM, Wathen A, Rockett KA, Mott R, Levin M, Newton CR, Marsh K, Relman DA, Kwiatkowski DP.

J Infect Dis. 2005 May 15;191(10):1599-611. Epub 2005 Apr 14.PMID: 15838786 [PubMed - indexed for MEDLINE]Related articles

Diversity of the human intestinal microbial flora.

Eckburg PB, Bik EM, Bernstein CN, Purdom E, Dethlefsen L, Sargent M, Gill SR, Nelson KE, Relman DA.

Science. 2005 Jun 10;308(5728):1635-8. Epub 2005 Apr 14.PMID: 15831718 [PubMed - indexed for MEDLINE]Related articlesFree article

VCAM-1 expression on CD8+ cells correlates with enhanced anti-HIV suppressing activity.

Diaz LS, Foster H, Stone MR, Fujimura S, Relman DA, Levy JA.

J Immunol. 2005 Feb 1;174(3):1574-9.PMID: 15661918 [PubMed - indexed for MEDLINE]Related articlesFree article

The host response to smallpox: analysis of the gene expression program in peripheral blood cells in a nonhuman primate model.

Rubins KH, Hensley LE, Jahrling PB, Whitney AR, Geisbert TW, Huggins JW, Owen A, Leduc JW, Brown PO, Relman DA.

Proc Natl Acad Sci U S A. 2004 Oct 19;101(42):15190-5. Epub 2004 Oct 11.PMID: 15477590 [PubMed - indexed for MEDLINE]Related articlesFree article

Exploring the potential of variola virus infection of cynomolgus macaques as a model for human smallpox.

Jahrling PB, Hensley LE, Martinez MJ, Leduc JW, Rubins KH, Relman DA, Huggins JW.

Proc Natl Acad Sci U S A. 2004 Oct 19;101(42):15196-200. Epub 2004 Oct 11.PMID: 15477589 [PubMed - indexed for MEDLINE]Related articlesFree article

Methanogenic Archaea and human periodontal disease.

Lepp PW, Brinig MM, Ouverney CC, Palm K, Armitage GC, Relman DA.

Proc Natl Acad Sci U S A. 2004 Apr 20;101(16):6176-81. Epub 2004 Apr 5.PMID: 15067114 [PubMed - indexed for MEDLINE]Related articlesFree article

Bordetella pertussis infection of primary human monocytes alters HLA-DR expression.

Shumilla JA, Lacaille V, Hornell TM, Huang J, Narasimhan S, Relman DA, Mellins ED.

Infect Immun. 2004 Mar;72(3):1450-62.PMID: 14977950 [PubMed - indexed for MEDLINE]Related articlesFree article

Bordetella species are distinguished by patterns of substantial gene loss and host adaptation.

Cummings CA, Brinig MM, Lepp PW, van de Pas S, Relman DA.

J Bacteriol. 2004 Mar;186(5):1484-92.PMID: 14973121 [PubMed - indexed for MEDLINE]Related articlesFree article

Role of interleukin 6 in myocardial dysfunction of meningococcal septic shock.

Pathan N, Hemingway CA, Alizadeh AA, Stephens AC, Boldrick JC, Oragui EE, McCabe C, Welch SB, Whitney A, O'Gara P, Nadel S, Relman DA, Harding SE, Levin M.

Lancet. 2004 Jan 17;363(9404):203-9.PMID: 14738793 [PubMed - indexed for MEDLINE]Related articles

Public health. Understanding threats to scientific openness.

Petro JB, Relman DA.

Science. 2003 Dec 12;302(5652):1898. No abstract available. PMID: 14671279 [PubMed - indexed for MEDLINE]Related articles

Shedding light on microbial detection.

Relman DA.

N Engl J Med. 2003 Nov 27;349(22):2162-3. No abstract available. PMID: 14645646 [PubMed - indexed for MEDLINE]Related articles

Single-cell enumeration of an uncultivated TM7 subgroup in the human subgingival crevice.

Ouverney CC, Armitage GC, Relman DA.

Appl Environ Microbiol. 2003 Oct;69(10):6294-8.PMID: 14532094 [PubMed - indexed for MEDLINE]Related articlesFree article

Cultivation of Tropheryma whipplei from cerebrospinal fluid.

Maiwald M, von Herbay A, Fredricks DN, Ouverney CC, Kosek JC, Relman DA.

J Infect Dis. 2003 Sep 15;188(6):801-8. Epub 2003 Sep 9.PMID: 12964110 [PubMed - indexed for MEDLINE]Related articles