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    Results: 21

    1.

    Gene expression profile of mouse prostate tumors reveals dysregulations in major biological processes and identifies potential murine targets for preclinical development of human prostate cancer therapy.

    Haram KM, Peltier HJ, Lu B, Bhasin M, Otu HH, Choy B, Regan M, Libermann TA, Latham GJ, Sanda MG, Arredouani MS.

    Prostate. 2008 Oct 1;68(14):1517-30.PMID: 18668517 [PubMed - indexed for MEDLINE]Related articles

    2.

    Grammar-based distance in progressive multiple sequence alignment.

    Russell DJ, Otu HH, Sayood K.

    BMC Bioinformatics. 2008 Jul 10;9:306.PMID: 18616828 [PubMed - indexed for MEDLINE]Related articlesFree article

    3.

    Genomic counter-stress changes induced by the relaxation response.

    Dusek JA, Otu HH, Wohlhueter AL, Bhasin M, Zerbini LF, Joseph MG, Benson H, Libermann TA.

    PLoS One. 2008 Jul 2;3(7):e2576.PMID: 18596974 [PubMed - indexed for MEDLINE]Related articlesFree article

    4.

    Differential expression of GADD45beta in normal and osteoarthritic cartilage: potential role in homeostasis of articular chondrocytes.

    Ijiri K, Zerbini LF, Peng H, Otu HH, Tsuchimochi K, Otero M, Dragomir C, Walsh N, Bierbaum BE, Mattingly D, van Flandern G, Komiya S, Aigner T, Libermann TA, Goldring MB.

    Arthritis Rheum. 2008 Jul;58(7):2075-87.PMID: 18576389 [PubMed - indexed for MEDLINE]Related articlesFree article

    5.

    Gene expression analysis of embryonic stem cells expressing VE-cadherin (CD144) during endothelial differentiation.

    Nikolova-Krstevski V, Bhasin M, Otu HH, Libermann T, Oettgen P.

    BMC Genomics. 2008 May 22;9:240.PMID: 18498633 [PubMed - indexed for MEDLINE]Related articlesFree article

    6.

    Serum proteomics and biomarkers in hepatocellular carcinoma and chronic liver disease.

    Zinkin NT, Grall F, Bhaskar K, Otu HH, Spentzos D, Kalmowitz B, Wells M, Guerrero M, Asara JM, Libermann TA, Afdhal NH.

    Clin Cancer Res. 2008 Jan 15;14(2):470-7.PMID: 18223221 [PubMed - indexed for MEDLINE]Related articlesFree article

    7.

    Proteomic identification of interleukin-2 therapy response in metastatic renal cell cancer.

    Jones J, Otu HH, Grall F, Spentzos D, Can H, Aivado M, Belldegrun AS, Pantuck AJ, Libermann TA.

    J Urol. 2008 Feb;179(2):730-6. Epub 2007 Dec 20.PMID: 18082202 [PubMed - indexed for MEDLINE]Related articles

    8.

    Gene expression of purified beta-cell tissue obtained from human pancreas with laser capture microdissection.

    Marselli L, Thorne J, Ahn YB, Omer A, Sgroi DC, Libermann T, Otu HH, Sharma A, Bonner-Weir S, Weir GC.

    J Clin Endocrinol Metab. 2008 Mar;93(3):1046-53. Epub 2007 Dec 11.PMID: 18073315 [PubMed - indexed for MEDLINE]Related articlesFree article

    9.

    Reduced PDEF expression increases invasion and expression of mesenchymal genes in prostate cancer cells.

    Gu X, Zerbini LF, Otu HH, Bhasin M, Yang Q, Joseph MG, Grall F, Onatunde T, Correa RG, Libermann TA.

    Cancer Res. 2007 May 1;67(9):4219-26.PMID: 17483333 [PubMed - indexed for MEDLINE]Related articlesFree article

    10.

    Prediction of diabetic nephropathy using urine proteomic profiling 10 years prior to development of nephropathy.

    Otu HH, Can H, Spentzos D, Nelson RG, Hanson RL, Looker HC, Knowler WC, Monroy M, Libermann TA, Karumanchi SA, Thadhani R.

    Diabetes Care. 2007 Mar;30(3):638-43.PMID: 17327333 [PubMed - indexed for MEDLINE]Related articlesFree article

    11.

    Restoration of liver mass after injury requires proliferative and not embryonic transcriptional patterns.

    Otu HH, Naxerova K, Ho K, Can H, Nesbitt N, Libermann TA, Karp SJ.

    J Biol Chem. 2007 Apr 13;282(15):11197-204. Epub 2007 Jan 16.PMID: 17227769 [PubMed - indexed for MEDLINE]Related articlesFree article

    12.

    Serum proteome profiling detects myelodysplastic syndromes and identifies CXC chemokine ligands 4 and 7 as markers for advanced disease.

    Aivado M, Spentzos D, Germing U, Alterovitz G, Meng XY, Grall F, Giagounidis AA, Klement G, Steidl U, Otu HH, Czibere A, Prall WC, Iking-Konert C, Shayne M, Ramoni MF, Gattermann N, Haas R, Mitsiades CS, Fung ET, Libermann TA.

    Proc Natl Acad Sci U S A. 2007 Jan 23;104(4):1307-12. Epub 2007 Jan 12.PMID: 17220270 [PubMed - indexed for MEDLINE]Related articlesFree article

    13.

    Essential role of Jun family transcription factors in PU.1 knockdown-induced leukemic stem cells.

    Steidl U, Rosenbauer F, Verhaak RG, Gu X, Ebralidze A, Otu HH, Klippel S, Steidl C, Bruns I, Costa DB, Wagner K, Aivado M, Kobbe G, Valk PJ, Passegué E, Libermann TA, Delwel R, Tenen DG.

    Nat Genet. 2006 Nov;38(11):1269-77. Epub 2006 Oct 15.PMID: 17041602 [PubMed - indexed for MEDLINE]Related articles

    14.

    A novel class of vascular endothelial growth factor-responsive genes that require forkhead activity for expression.

    Abid MR, Shih SC, Otu HH, Spokes KC, Okada Y, Curiel DT, Minami T, Aird WC.

    J Biol Chem. 2006 Nov 17;281(46):35544-53. Epub 2006 Sep 15.PMID: 16980307 [PubMed - indexed for MEDLINE]Related articlesFree article

    15.

    The transcriptome of human oocytes.

    Kocabas AM, Crosby J, Ross PJ, Otu HH, Beyhan Z, Can H, Tam WL, Rosa GJ, Halgren RG, Lim B, Fernandez E, Cibelli JB.

    Proc Natl Acad Sci U S A. 2006 Sep 19;103(38):14027-32. Epub 2006 Sep 12.PMID: 16968779 [PubMed - indexed for MEDLINE]Related articlesFree article

    16.

    Proteomic analysis of the allograft response.

    El Essawy B, Otu HH, Choy B, Zheng XX, Libermann TA, Strom TB.

    Transplantation. 2006 Jul 27;82(2):267-74.PMID: 16858291 [PubMed - indexed for MEDLINE]Related articles

    17.

    Optimization and evaluation of surface-enhanced laser desorption/ionization time-of-flight mass spectrometry (SELDI-TOF MS) with reversed-phase protein arrays for protein profiling.

    Aivado M, Spentzos D, Alterovitz G, Otu HH, Grall F, Giagounidis AA, Wells M, Cho JY, Germing U, Czibere A, Prall WC, Porter C, Ramoni MF, Libermann TA.

    Clin Chem Lab Med. 2005;43(2):133-40.PMID: 15843205 [PubMed - indexed for MEDLINE]Related articles

    18.

    Utilization of the relative complexity measure to construct a phylogenetic tree for fungi.

    Bastola DR, Otu HH, Doukas SE, Sayood K, Hinrichs SH, Iwen PC.

    Mycol Res. 2004 Feb;108(Pt 2):117-25.PMID: 15119348 [PubMed - indexed for MEDLINE]Related articles

    19.

    A new sequence distance measure for phylogenetic tree construction.

    Otu HH, Sayood K.

    Bioinformatics. 2003 Nov 1;19(16):2122-30.PMID: 14594718 [PubMed - indexed for MEDLINE]Related articlesFree article

    20.

    Comment on " 'Stemness': transcriptional profiling of embryonic and adult stem cells" and "a stem cell molecular signature".

    Fortunel NO, Otu HH, Ng HH, Chen J, Mu X, Chevassut T, Li X, Joseph M, Bailey C, Hatzfeld JA, Hatzfeld A, Usta F, Vega VB, Long PM, Libermann TA, Lim B.

    Science. 2003 Oct 17;302(5644):393; author reply 393. No abstract available. PMID: 14563990 [PubMed - indexed for MEDLINE]Related articlesFree article

    21.

    A divide-and-conquer approach to fragment assembly.

    Otu HH, Sayood K.

    Bioinformatics. 2003 Jan;19(1):22-9.PMID: 12499289 [PubMed - indexed for MEDLINE]Related articlesFree article

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