PubMed

Quantification of isotopically overlapping deamidated and 18o-labeled peptides using isotopic envelope mixture modeling.

Dasari S, Wilmarth PA, Reddy AP, Robertson LJ, Nagalla SR, David LL.

J Proteome Res. 2009 Mar;8(3):1263-70.PMID: 19173613 [PubMed - indexed for MEDLINE]Related articles

Proteomic identification of salivary biomarkers of type-2 diabetes.

Rao PV, Reddy AP, Lu X, Dasari S, Krishnaprasad A, Biggs E, Roberts CT, Nagalla SR.

J Proteome Res. 2009 Jan;8(1):239-45.PMID: 19118452 [PubMed - indexed for MEDLINE]Related articles

Reliable detection of deamidated peptides from lens crystallin proteins using changes in reversed-phase elution times and parent ion masses.

Dasari S, Wilmarth PA, Rustvold DL, Riviere MA, Nagalla SR, David LL.

J Proteome Res. 2007 Sep;6(9):3819-26. Epub 2007 Aug 14.PMID: 17696381 [PubMed - indexed for MEDLINE]Related articles

Comprehensive proteomic analysis of the human amniotic fluid proteome: gestational age-dependent changes.

Michaels JE, Dasari S, Pereira L, Reddy AP, Lapidus JA, Lu X, Jacob T, Thomas A, Rodland M, Roberts CT Jr, Gravett MG, Nagalla SR.

J Proteome Res. 2007 Apr;6(4):1277-85. Epub 2007 Mar 21.PMID: 17373841 [PubMed - indexed for MEDLINE]Related articles

Identification of novel protein biomarkers of preterm birth in human cervical-vaginal fluid.

Pereira L, Reddy AP, Jacob T, Thomas A, Schneider KA, Dasari S, Lapidus JA, Lu X, Rodland M, Roberts CT Jr, Gravett MG, Nagalla SR.

J Proteome Res. 2007 Apr;6(4):1269-76. Epub 2007 Mar 21.PMID: 17373840 [PubMed - indexed for MEDLINE]Related articles

Comprehensive proteomic analysis of human cervical-vaginal fluid.

Dasari S, Pereira L, Reddy AP, Michaels JE, Lu X, Jacob T, Thomas A, Rodland M, Roberts CT Jr, Gravett MG, Nagalla SR.

J Proteome Res. 2007 Apr;6(4):1258-68. Epub 2007 Mar 21.PMID: 17373839 [PubMed - indexed for MEDLINE]Related articlesFree article

Proteomic analysis of maternal serum in down syndrome: identification of novel protein biomarkers.

Nagalla SR, Canick JA, Jacob T, Schneider KA, Reddy AP, Thomas A, Dasari S, Lu X, Lapidus JA, Lambert-Messerlian GM, Gravett MG, Roberts CT Jr, Luthy D, Malone FD, D'Alton ME.

J Proteome Res. 2007 Apr;6(4):1245-57. Epub 2007 Mar 21.PMID: 17373838 [PubMed - indexed for MEDLINE]Related articles

Proteomic identification of urinary biomarkers of diabetic nephropathy.

Rao PV, Lu X, Standley M, Pattee P, Neelima G, Girisesh G, Dakshinamurthy KV, Roberts CT Jr, Nagalla SR.

Diabetes Care. 2007 Mar;30(3):629-37. Erratum in: Diabetes Care. 2007 May;30(5):1330. PMID: 17327332 [PubMed - indexed for MEDLINE]Related articlesFree article

Proteomic analysis of cervical-vaginal fluid: identification of novel biomarkers for detection of intra-amniotic infection.

Gravett MG, Thomas A, Schneider KA, Reddy AP, Dasari S, Jacob T, Lu X, Rodland M, Pereira L, Sadowsky DW, Roberts CT Jr, Novy MJ, Nagalla SR.

J Proteome Res. 2007 Jan;6(1):89-96.PMID: 17203952 [PubMed - indexed for MEDLINE]Related articlesFree article

Genotoxicants target distinct molecular networks in neonatal neurons.

Kisby GE, Olivas A, Standley M, Lu X, Pattee P, O'Malley J, Li X, Muniz J, Nagalla SR.

Environ Health Perspect. 2006 Nov;114(11):1703-12.PMID: 17107856 [PubMed - indexed for MEDLINE]Related articlesFree article

Proteomic analysis of the genotoxicant methylazoxymethanol (MAM)-induced changes in the developing cerebellum.

Kisby GE, Standley M, Park T, Olivas A, Fei S, Jacob T, Reddy A, Lu X, Pattee P, Nagalla SR.

J Proteome Res. 2006 Oct;5(10):2656-65.PMID: 17022636 [PubMed - indexed for MEDLINE]Related articles

Age-related changes in human crystallins determined from comparative analysis of post-translational modifications in young and aged lens: does deamidation contribute to crystallin insolubility?

Wilmarth PA, Tanner S, Dasari S, Nagalla SR, Riviere MA, Bafna V, Pevzner PA, David LL.

J Proteome Res. 2006 Oct;5(10):2554-66.PMID: 17022627 [PubMed - indexed for MEDLINE]Related articlesFree article

A novel EWS-WT1 gene fusion product in desmoplastic small round cell tumor is a potent transactivator of the insulin-like growth factor-I receptor (IGF-IR) gene.

Werner H, Idelman G, Rubinstein M, Pattee P, Nagalla SR, Roberts CT Jr.

Cancer Lett. 2007 Mar 8;247(1):84-90. Epub 2006 May 30.PMID: 16730884 [PubMed - indexed for MEDLINE]Related articles

Detection of intra-amniotic infection in a rabbit model by proteomics-based amniotic fluid analysis.

Klein LL, Freitag BC, Gibbs RS, Reddy AP, Nagalla SR, Gravett MG.

Am J Obstet Gynecol. 2005 Oct;193(4):1302-6.PMID: 16202718 [PubMed - indexed for MEDLINE]Related articles

Peripheral genotype-phenotype correlations in Asian Indians with type 2 diabetes mellitus.

Rao PV, Lu X, Pattee P, Turner M, Nandgaonkar S, Paturi BT, Roberts CT Jr, Nagalla SR.

J Assoc Physicians India. 2005 Jun;53:521-6.PMID: 16121806 [PubMed - indexed for MEDLINE]Related articles

Standardizing global gene expression analysis between laboratories and across platforms.

Bammler T, Beyer RP, Bhattacharya S, Boorman GA, Boyles A, Bradford BU, Bumgarner RE, Bushel PR, Chaturvedi K, Choi D, Cunningham ML, Deng S, Dressman HK, Fannin RD, Farin FM, Freedman JH, Fry RC, Harper A, Humble MC, Hurban P, Kavanagh TJ, Kaufmann WK, Kerr KF, Jing L, Lapidus JA, Lasarev MR, Li J, Li YJ, Lobenhofer EK, Lu X, Malek RL, Milton S, Nagalla SR, O'malley JP, Palmer VS, Pattee P, Paules RS, Perou CM, Phillips K, Qin LX, Qiu Y, Quigley SD, Rodland M, Rusyn I, Samson LD, Schwartz DA, Shi Y, Shin JL, Sieber SO, Slifer S, Speer MC, Spencer PS, Sproles DI, Swenberg JA, Suk WA, Sullivan RC, Tian R, Tennant RW, Todd SA, Tucker CJ, Van Houten B, Weis BK, Xuan S, Zarbl H; Members of the Toxicogenomics Research Consortium.

Nat Methods. 2005 May;2(5):351-6. Epub 2005 Apr 21. Erratum in: Nat Methods. 2005 Jun;2(6):477. PMID: 15846362 [PubMed - indexed for MEDLINE]Related articles

Molecular networks perturbed in a developmental animal model of brain injury.

Kisby GE, Standley M, Lu X, O'Malley J, Lin B, Muniz J, Luo NL, Pattee P, Back SA, Nagalla SR.

Neurobiol Dis. 2005 Jun-Jul;19(1-2):108-18.PMID: 15837566 [PubMed - indexed for MEDLINE]Related articles

Identification of protein modifications using MS/MS de novo sequencing and the OpenSea alignment algorithm.

Searle BC, Dasari S, Wilmarth PA, Turner M, Reddy AP, David LL, Nagalla SR.

J Proteome Res. 2005 Mar-Apr;4(2):546-54.PMID: 15822933 [PubMed - indexed for MEDLINE]Related articles

GABAergic system gene expression predicts clinical outcome in patients with neuroblastoma.

Roberts SS, Mori M, Pattee P, Lapidus J, Mathews R, O'Malley JP, Hsieh YC, Turner MA, Wang Z, Tian Q, Rodland MJ, Reynolds CP, Seeger RC, Nagalla SR.

J Clin Oncol. 2004 Oct 15;22(20):4127-34.PMID: 15483022 [PubMed - indexed for MEDLINE]Related articles

Diagnosis of intra-amniotic infection by proteomic profiling and identification of novel biomarkers.

Gravett MG, Novy MJ, Rosenfeld RG, Reddy AP, Jacob T, Turner M, McCormack A, Lapidus JA, Hitti J, Eschenbach DA, Roberts CT Jr, Nagalla SR.

JAMA. 2004 Jul 28;292(4):462-9. Erratum in: JAMA. 2004 Nov;292(19):2340. PMID: 15280344 [PubMed - indexed for MEDLINE]Related articlesFree article

Suppression subtractive hybridization and microarray identification of estrogen-regulated hypothalamic genes.

Malyala A, Pattee P, Nagalla SR, Kelly MJ, Rønnekleiv OK.

Neurochem Res. 2004 Jun;29(6):1189-200.PMID: 15176476 [PubMed - indexed for MEDLINE]Related articles

High-throughput identification of proteins and unanticipated sequence modifications using a mass-based alignment algorithm for MS/MS de novo sequencing results.

Searle BC, Dasari S, Turner M, Reddy AP, Choi D, Wilmarth PA, McCormack AL, David LL, Nagalla SR.

Anal Chem. 2004 Apr 15;76(8):2220-30.PMID: 15080731 [PubMed - indexed for MEDLINE]Related articles

Cloning and characterization of Xen-dorphin prohormone from Xenopus laevis: a new opioid-like prohormone distinct from proenkephalin and prodynorphin.

Pattee P, Ilie AE, Benyhe S, Toth G, Borsodi A, Nagalla SR.

J Biol Chem. 2003 Dec 26;278(52):53098-104. Epub 2003 Oct 2.PMID: 14525992 [PubMed - indexed for MEDLINE]Related articlesFree article

Genetic basis for chamber-specific ventricular phenotypes in the rat infarct model.

Chugh SS, Whitesel S, Turner M, Roberts CT Jr, Nagalla SR.

Cardiovasc Res. 2003 Feb;57(2):477-85.PMID: 12566120 [PubMed - indexed for MEDLINE]Related articlesFree article

Identification of STAT-1 as a molecular target of IGFBP-3 in the process of chondrogenesis.

Spagnoli A, Torello M, Nagalla SR, Horton WA, Pattee P, Hwa V, Chiarelli F, Roberts CT Jr, Rosenfeld RG.

J Biol Chem. 2002 May 24;277(21):18860-7. Epub 2002 Mar 8.PMID: 11886859 [PubMed - indexed for MEDLINE]Related articlesFree article

Morphine regulation of a novel uridine diphosphate glucuronosyl-transferase in guinea pig pups following in utero exposure.

Smith SA, Nagalla SR, Andrews DP, Olsen GD.

Mol Genet Metab. 1999 Sep;68(1):68-77.PMID: 10479484 [PubMed - indexed for MEDLINE]Related articles

Cloning and characterization of a thermostable cellobiose dehydrogenase from Sporotrichum thermophile.

Subramaniam SS, Nagalla SR, Renganathan V.

Arch Biochem Biophys. 1999 May 15;365(2):223-30.PMID: 10328816 [PubMed - indexed for MEDLINE]Related articles

Identification of a family of low-affinity insulin-like growth factor binding proteins (IGFBPs): characterization of connective tissue growth factor as a member of the IGFBP superfamily.

Kim HS, Nagalla SR, Oh Y, Wilson E, Roberts CT Jr, Rosenfeld RG.

Proc Natl Acad Sci U S A. 1997 Nov 25;94(24):12981-6.PMID: 9371786 [PubMed - indexed for MEDLINE]Related articlesFree article

Cellobiose dehydrogenase from Phanerochaete chrysosporium is encoded by two allelic variants.

Li B, Nagalla SR, Renganathan V.

Appl Environ Microbiol. 1997 Feb;63(2):796-9.PMID: 9023960 [PubMed - indexed for MEDLINE]Related articlesFree article

Synthesis and characterization of insulin-like growth factor-binding protein (IGFBP)-7. Recombinant human mac25 protein specifically binds IGF-I and -II.

Oh Y, Nagalla SR, Yamanaka Y, Kim HS, Wilson E, Rosenfeld RG.

J Biol Chem. 1996 Nov 29;271(48):30322-5.PMID: 8939990 [PubMed - indexed for MEDLINE]Related articlesFree article

Cloning of a cDNA encoding cellobiose dehydrogenase, a hemoflavoenzyme from Phanerochaete chrysosporium.

Li B, Nagalla SR, Renganathan V.

Appl Environ Microbiol. 1996 Apr;62(4):1329-35.PMID: 8919793 [PubMed - indexed for MEDLINE]Related articlesFree article

There are three distinct forms of bombesin. Identification of [Leu13]bombesin, [Phe13]bombesin, and [Ser3,Arg10,Phe13]bombesin in the frog Bombina orientalis.

Nagalla SR, Barry BJ, Falick AM, Gibson BW, Taylor JE, Dong JZ, Spindel ER.

J Biol Chem. 1996 Mar 29;271(13):7731-7.PMID: 8631814 [PubMed - indexed for MEDLINE]Related articlesFree article

Cloning of a receptor for amphibian [Phe13]bombesin distinct from the receptor for gastrin-releasing peptide: identification of a fourth bombesin receptor subtype (BB4).

Nagalla SR, Barry BJ, Creswick KC, Eden P, Taylor JT, Spindel ER.

Proc Natl Acad Sci U S A. 1995 Jun 20;92(13):6205-9.PMID: 7597102 [PubMed - indexed for MEDLINE]Related articlesFree article

A rhesus monkey model to characterize the role of gastrin-releasing peptide (GRP) in lung development. Evidence for stimulation of airway growth.

Li K, Nagalla SR, Spindel ER.

J Clin Invest. 1994 Oct;94(4):1605-15.PMID: 7929836 [PubMed - indexed for MEDLINE]Related articlesFree article

Functional analysis of the 5'-flanking region of the human gastrin-releasing peptide gene in small cell lung carcinoma cell lines.

Nagalla SR, Spindel ER.

Cancer Res. 1994 Aug 15;54(16):4461-7.PMID: 8044796 [PubMed - indexed for MEDLINE]Related articlesFree article

Cloning of complementary DNAs encoding the amphibian bombesin-like peptides Phe8 and Leu8 phyllolitorin from Phyllomedusa sauvagei: potential role of U to C RNA editing in generating neuropeptide diversity.

Nagalla SR, Barry BJ, Spindel ER.

Mol Endocrinol. 1994 Aug;8(8):943-51.PMID: 7997236 [PubMed - indexed for MEDLINE]Related articles

Progesterone receptor, but not estradiol receptor, messenger ribonucleic acid is expressed in luteinizing granulosa cells and the corpus luteum in rhesus monkeys.

Chandrasekher YA, Melner MH, Nagalla SR, Stouffer RL.

Endocrinology. 1994 Jul;135(1):307-14.PMID: 8013365 [PubMed - indexed for MEDLINE]Related articles

Molecular cloning and characterization of receptors for the mammalian bombesin-like peptides.

Giladi E, Nagalla SR, Spindel ER.

J Mol Neurosci. 1993 Spring;4(1):41-54.PMID: 8391296 [PubMed - indexed for MEDLINE]Related articles

Gastrin-releasing peptide (GRP) is not mammalian bombesin. Identification and molecular cloning of a true amphibian GRP distinct from amphibian bombesin in Bombina orientalis.

Nagalla SR, Gibson BW, Tang D, Reeve JR Jr, Spindel ER.

J Biol Chem. 1992 Apr 5;267(10):6916-22.PMID: 1551901 [PubMed - indexed for MEDLINE]Related articlesFree article