PubMed

Computational analysis of looping of a large family of highly bent DNA by LacI.

Lillian TD, Goyal S, Kahn JD, Meyhöfer E, Perkins NC.

Biophys J. 2008 Dec 15;95(12):5832-42. Epub 2008 Oct 17.PMID: 18931251 [PubMed - indexed for MEDLINE]Related articles

Flaws in the U.S. Food and Drug Administration's rationale for supporting the development and approval of BiDil as a treatment for heart failure only in black patients.

Ellison GT, Kaufman JS, Head RF, Martin PA, Kahn JD.

J Law Med Ethics. 2008 Fall;36(3):449-57.PMID: 18840235 [PubMed - indexed for MEDLINE]Related articlesFree article

Eukaryotic HMGB proteins as replacements for HU in E. coli repression loop formation.

Becker NA, Kahn JD, Maher LJ 3rd.

Nucleic Acids Res. 2008 Jul;36(12):4009-21. Epub 2008 May 31.PMID: 18515834 [PubMed - indexed for MEDLINE]Related articlesFree article

BiDil for heart failure in black patients.

Kahn JD.

Ann Intern Med. 2007 Aug 7;147(3):215; author reply 215-6. No abstract available. PMID: 17679713 [PubMed - indexed for MEDLINE]Related articlesFree article

Effects of nucleoid proteins on DNA repression loop formation in Escherichia coli.

Becker NA, Kahn JD, Maher LJ 3rd.

Nucleic Acids Res. 2007;35(12):3988-4000. Epub 2007 Jun 6.PMID: 17553830 [PubMed - indexed for MEDLINE]Related articlesFree article

Position-dependent effects of locked nucleic acid (LNA) on DNA sequencing and PCR primers.

Levin JD, Fiala D, Samala MF, Kahn JD, Peterson RJ.

Nucleic Acids Res. 2006;34(20):e142. Epub 2006 Oct 28.PMID: 17071964 [PubMed - indexed for MEDLINE]Related articlesFree article

3D reconstruction and comparison of shapes of DNA minicircles observed by cryo-electron microscopy.

Amzallag A, Vaillant C, Jacob M, Unser M, Bednar J, Kahn JD, Dubochet J, Stasiak A, Maddocks JH.

Nucleic Acids Res. 2006;34(18):e125. Epub 2006 Sep 29.PMID: 17012274 [PubMed - indexed for MEDLINE]Related articlesFree article

DNA bending by bHLH charge variants.

McDonald RJ, Kahn JD, Maher LJ 3rd.

Nucleic Acids Res. 2006;34(17):4846-56. Epub 2006 Sep 14.PMID: 16973898 [PubMed - indexed for MEDLINE]Related articlesFree article

Single-molecule spectroscopic determination of lac repressor-DNA loop conformation.

Morgan MA, Okamoto K, Kahn JD, English DS.

Biophys J. 2005 Oct;89(4):2588-96. Epub 2005 Aug 5.PMID: 16085773 [PubMed - indexed for MEDLINE]Related articlesFree article

Pharmacogenetics and ethnically targeted therapies: racial drugs need to be put in context.

Kahn JD.

BMJ. 2005 Jun 25;330(7506):1508; author reply 1508. No abstract available. PMID: 15976430 [PubMed - indexed for MEDLINE]Related articlesFree article

Bacterial repression loops require enhanced DNA flexibility.

Becker NA, Kahn JD, Maher LJ 3rd.

J Mol Biol. 2005 Jun 17;349(4):716-30. Erratum in: J Mol Biol. 2005 Nov 4;353(4):924-6. PMID: 15893770 [PubMed - indexed for MEDLINE]Related articles

Geometric and dynamic requirements for DNA looping, wrapping and unwrapping in the activation of E.coli glnAp2 transcription by NtrC.

Lilja AE, Jenssen JR, Kahn JD.

J Mol Biol. 2004 Sep 10;342(2):467-78.PMID: 15327947 [PubMed - indexed for MEDLINE]Related articles

Sequence-dependent thermodynamic parameters for locked nucleic acid (LNA)-DNA duplex formation.

McTigue PM, Peterson RJ, Kahn JD.

Biochemistry. 2004 May 11;43(18):5388-405.PMID: 15122905 [PubMed - indexed for MEDLINE]Related articles

Methods for analyzing DNA bending.

Kahn JD.

Methods Mol Biol. 1999;94:109-23. No abstract available. PMID: 12844867 [PubMed - indexed for MEDLINE]Related articles

Fluorescence resonance energy transfer over approximately 130 basepairs in hyperstable lac repressor-DNA loops.

Edelman LM, Cheong R, Kahn JD.

Biophys J. 2003 Feb;84(2 Pt 1):1131-45.PMID: 12547794 [PubMed - indexed for MEDLINE]Related articlesFree article

Dominant effect of protein charge rather than protein shape in apparent DNA bending by engineered bZIP domains.

Hardwidge PR, Kahn JD, Maher LJ 3rd.

Biochemistry. 2002 Jul 2;41(26):8277-88.PMID: 12081476 [PubMed - indexed for MEDLINE]Related articles

Topological effects of the TATA box binding protein on minicircle DNA and a possible thermodynamic linkage to chromatin remodeling.

Kahn JD.

Biochemistry. 2000 Apr 4;39(13):3520-4. Review.PMID: 10736150 [PubMed - indexed for MEDLINE]Related articles

Designed hyperstable Lac repressor.DNA loop topologies suggest alternative loop geometries.

Mehta RA, Kahn JD.

J Mol Biol. 1999 Nov 19;294(1):67-77.PMID: 10556029 [PubMed - indexed for MEDLINE]Related articles

TATA box DNA deformation with and without the TATA box-binding protein.

Davis NA, Majee SS, Kahn JD.

J Mol Biol. 1999 Aug 13;291(2):249-65.PMID: 10438619 [PubMed - indexed for MEDLINE]Related articles

Measurement of the DNA bend angle induced by the catabolite activator protein using Monte Carlo simulation of cyclization kinetics.

Kahn JD, Crothers DM.

J Mol Biol. 1998 Feb 13;276(1):287-309.PMID: 9514724 [PubMed - indexed for MEDLINE]Related articles

Characterization of the ATF/CREB site and its complex with GCN4.

Hockings SC, Kahn JD, Crothers DM.

Proc Natl Acad Sci U S A. 1998 Feb 17;95(4):1410-5.PMID: 9465028 [PubMed - indexed for MEDLINE]Related articlesFree article

Identification and characterization of genomic nucleosome-positioning sequences.

Widlund HR, Cao H, Simonsson S, Magnusson E, Simonsson T, Nielsen PE, Kahn JD, Crothers DM, Kubista M.

J Mol Biol. 1997 Apr 11;267(4):807-17.PMID: 9135113 [PubMed - indexed for MEDLINE]Related articles

Sequence elements responsible for DNA curvature.

Haran TE, Kahn JD, Crothers DM.

J Mol Biol. 1994 Nov 25;244(2):135-43.PMID: 7966325 [PubMed - indexed for MEDLINE]Related articles

Detection of localized DNA flexibility.

Kahn JD, Yun E, Crothers DM.

Nature. 1994 Mar 10;368(6467):163-6.PMID: 8139661 [PubMed - indexed for MEDLINE]Related articles

Sequence and structure of cmp, the replication enhancer of the Staphylococcus aureus plasmid pT181.

Henriquez V, Milisavljevic V, Kahn JD, Gennaro ML.

Gene. 1993 Nov 30;134(1):93-8.PMID: 8244037 [PubMed - indexed for MEDLINE]Related articles

DNA bending in transcription initiation.

Kahn JD, Crothers DM.

Cold Spring Harb Symp Quant Biol. 1993;58:115-22. No abstract available. PMID: 7956021 [PubMed - indexed for MEDLINE]Related articles

Protein-induced bending and DNA cyclization.

Kahn JD, Crothers DM.

Proc Natl Acad Sci U S A. 1992 Jul 15;89(14):6343-7.PMID: 1321436 [PubMed - indexed for MEDLINE]Related articlesFree article

Volunteer protection legislation.

Kahn JD.

J Volunt Adm. 1991 Spring;9(3):26-30. No abstract available. PMID: 10112484 [PubMed - indexed for MEDLINE]Related articles

DNA bending, flexibility, and helical repeat by cyclization kinetics.

Crothers DM, Drak J, Kahn JD, Levene SD.

Methods Enzymol. 1992;212:3-29. No abstract available. PMID: 1518450 [PubMed - indexed for MEDLINE]Related articles

RNA folding during transcription by Escherichia coli RNA polymerase analyzed by RNA self-cleavage.

Monforte JA, Kahn JD, Hearst JE.

Biochemistry. 1990 Aug 28;29(34):7882-90.PMID: 1702018 [PubMed - indexed for MEDLINE]Related articles

Reversibility of nucleotide incorporation by Escherichia coli RNA polymerase, and its effect on fidelity.

Kahn JD, Hearst JE.

J Mol Biol. 1989 Jan 20;205(2):291-314.PMID: 2467002 [PubMed - indexed for MEDLINE]Related articles

New methods for probing nucleic acids.

Spielmann HP, Kahn JD, Hearst JE.

Bioessays. 1986 Nov;5(5):232-4. No abstract available. PMID: 2434078 [PubMed - indexed for MEDLINE]Related articles