PubMed

Edgetic perturbation models of human inherited disorders.

Zhong Q, Simonis N, Li QR, Charloteaux B, Heuze F, Klitgord N, Tam S, Yu H, Venkatesan K, Mou D, Swearingen V, Yildirim MA, Yan H, Dricot A, Szeto D, Lin C, Hao T, Fan C, Milstein S, Dupuy D, Brasseur R, Hill DE, Cusick ME, Vidal M.

Mol Syst Biol. 2009;5:321. Epub 2009 Nov 3.PMID: 19888216 [PubMed - in process]Related articlesFree article

'Edgetic' perturbation of a C. elegans BCL2 ortholog.

Dreze M, Charloteaux B, Milstein S, Vidalain PO, Yildirim MA, Zhong Q, Svrzikapa N, Romero V, Laloux G, Brasseur R, Vandenhaute J, Boxem M, Cusick ME, Hill DE, Vidal M.

Nat Methods. 2009 Nov;6(11):843-9. Epub 2009 Oct 25.PMID: 19855391 [PubMed - in process]Related articles

In vitro responses to avian influenza H5 by human CD4 T cells.

Cusick MF, Wang S, Eckels DD.

J Immunol. 2009 Nov 15;183(10):6432-41. Epub 2009 Oct 19.PMID: 19841175 [PubMed - in process]Related articles

Large-scale RACE approach for proactive experimental definition of C. elegans ORFeome.

Salehi-Ashtiani K, Lin C, Hao T, Shen Y, Szeto D, Yang X, Ghamsari L, Lee H, Fan C, Murray RR, Milstein S, Svrzikapa N, Cusick ME, Roth FP, Hill DE, Vidal M.

Genome Res. 2009 Nov 2. [Epub ahead of print]PMID: 19801531 [PubMed - as supplied by publisher]Related articlesFree article

Multimodal assessment of protein functional deficiency supports pathogenicity of BRCA1 p.V1688del.

De Nicolo A, Parisini E, Zhong Q, Dalla Palma M, Stoeckert KA, Domchek SM, Nathanson KL, Caligo MA, Vidal M, Cusick ME, Garber JE.

Cancer Res. 2009 Sep 1;69(17):7030-7. Epub 2009 Aug 25.PMID: 19706752 [PubMed - indexed for MEDLINE]Related articles

Mass in the neck after radiation exposure from Chernobyl disaster.

O'Brien JC, Shiller SM, Cusick MG, Hamman BL.

Proc (Bayl Univ Med Cent). 2009 Apr;22(2):156-61. No abstract available. PMID: 19381320 [PubMed - in process]Related articlesFree article

Empirically controlled mapping of the Caenorhabditis elegans protein-protein interactome network.

Simonis N, Rual JF, Carvunis AR, Tasan M, Lemmens I, Hirozane-Kishikawa T, Hao T, Sahalie JM, Venkatesan K, Gebreab F, Cevik S, Klitgord N, Fan C, Braun P, Li N, Ayivi-Guedehoussou N, Dann E, Bertin N, Szeto D, Dricot A, Yildirim MA, Lin C, de Smet AS, Kao HL, Simon C, Smolyar A, Ahn JS, Tewari M, Boxem M, Milstein S, Yu H, Dreze M, Vandenhaute J, Gunsalus KC, Cusick ME, Hill DE, Tavernier J, Roth FP, Vidal M.

Nat Methods. 2009 Jan;6(1):47-54.PMID: 19123269 [PubMed - indexed for MEDLINE]Related articles

Literature-curated protein interaction datasets.

Cusick ME, Yu H, Smolyar A, Venkatesan K, Carvunis AR, Simonis N, Rual JF, Borick H, Braun P, Dreze M, Vandenhaute J, Galli M, Yazaki J, Hill DE, Ecker JR, Roth FP, Vidal M.

Nat Methods. 2009 Jan;6(1):39-46.PMID: 19116613 [PubMed - indexed for MEDLINE]Related articlesFree article

An empirical framework for binary interactome mapping.

Venkatesan K, Rual JF, Vazquez A, Stelzl U, Lemmens I, Hirozane-Kishikawa T, Hao T, Zenkner M, Xin X, Goh KI, Yildirim MA, Simonis N, Heinzmann K, Gebreab F, Sahalie JM, Cevik S, Simon C, de Smet AS, Dann E, Smolyar A, Vinayagam A, Yu H, Szeto D, Borick H, Dricot A, Klitgord N, Murray RR, Lin C, Lalowski M, Timm J, Rau K, Boone C, Braun P, Cusick ME, Roth FP, Hill DE, Tavernier J, Wanker EE, Barabási AL, Vidal M.

Nat Methods. 2009 Jan;6(1):83-90. Epub 2008 Dec 7.PMID: 19060904 [PubMed - indexed for MEDLINE]Related articles

An experimentally derived confidence score for binary protein-protein interactions.

Braun P, Tasan M, Dreze M, Barrios-Rodiles M, Lemmens I, Yu H, Sahalie JM, Murray RR, Roncari L, de Smet AS, Venkatesan K, Rual JF, Vandenhaute J, Cusick ME, Pawson T, Hill DE, Tavernier J, Wrana JL, Roth FP, Vidal M.

Nat Methods. 2009 Jan;6(1):91-7. Epub 2008 Dec 7.PMID: 19060903 [PubMed - indexed for MEDLINE]Related articles

VirusMINT: a viral protein interaction database.

Chatr-aryamontri A, Ceol A, Peluso D, Nardozza A, Panni S, Sacco F, Tinti M, Smolyar A, Castagnoli L, Vidal M, Cusick ME, Cesareni G.

Nucleic Acids Res. 2009 Jan;37(Database issue):D669-73. Epub 2008 Oct 30.PMID: 18974184 [PubMed - indexed for MEDLINE]Related articlesFree article

High-quality binary protein interaction map of the yeast interactome network.

Yu H, Braun P, Yildirim MA, Lemmens I, Venkatesan K, Sahalie J, Hirozane-Kishikawa T, Gebreab F, Li N, Simonis N, Hao T, Rual JF, Dricot A, Vazquez A, Murray RR, Simon C, Tardivo L, Tam S, Svrzikapa N, Fan C, de Smet AS, Motyl A, Hudson ME, Park J, Xin X, Cusick ME, Moore T, Boone C, Snyder M, Roth FP, Barabási AL, Tavernier J, Hill DE, Vidal M.

Science. 2008 Oct 3;322(5898):104-10. Epub 2008 Aug 21.PMID: 18719252 [PubMed - indexed for MEDLINE]Related articlesFree article

Isoform discovery by targeted cloning, 'deep-well' pooling and parallel sequencing.

Salehi-Ashtiani K, Yang X, Derti A, Tian W, Hao T, Lin C, Makowski K, Shen L, Murray RR, Szeto D, Tusneem N, Smith DR, Cusick ME, Hill DE, Roth FP, Vidal M.

Nat Methods. 2008 Jul;5(7):597-600. Epub 2008 Jun 15.PMID: 18552854 [PubMed - indexed for MEDLINE]Related articlesFree article

Revisiting the Saccharomyces cerevisiae predicted ORFeome.

Li QR, Carvunis AR, Yu H, Han JD, Zhong Q, Simonis N, Tam S, Hao T, Klitgord NJ, Dupuy D, Mou D, Wapinski I, Regev A, Hill DE, Cusick ME, Vidal M.

Genome Res. 2008 Aug;18(8):1294-303. Epub 2008 May 23.PMID: 18502943 [PubMed - indexed for MEDLINE]Related articlesFree article

Broadening the horizon--level 2.5 of the HUPO-PSI format for molecular interactions.

Kerrien S, Orchard S, Montecchi-Palazzi L, Aranda B, Quinn AF, Vinod N, Bader GD, Xenarios I, Wojcik J, Sherman D, Tyers M, Salama JJ, Moore S, Ceol A, Chatr-Aryamontri A, Oesterheld M, Stümpflen V, Salwinski L, Nerothin J, Cerami E, Cusick ME, Vidal M, Gilson M, Armstrong J, Woollard P, Hogue C, Eisenberg D, Cesareni G, Apweiler R, Hermjakob H.

BMC Biol. 2007 Oct 9;5:44.PMID: 17925023 [PubMed - indexed for MEDLINE]Related articlesFree article

Network modeling links breast cancer susceptibility and centrosome dysfunction.

Pujana MA, Han JD, Starita LM, Stevens KN, Tewari M, Ahn JS, Rennert G, Moreno V, Kirchhoff T, Gold B, Assmann V, Elshamy WM, Rual JF, Levine D, Rozek LS, Gelman RS, Gunsalus KC, Greenberg RA, Sobhian B, Bertin N, Venkatesan K, Ayivi-Guedehoussou N, Solé X, Hernández P, Lázaro C, Nathanson KL, Weber BL, Cusick ME, Hill DE, Offit K, Livingston DM, Gruber SB, Parvin JD, Vidal M.

Nat Genet. 2007 Nov;39(11):1338-49. Epub 2007 Oct 7.PMID: 17922014 [PubMed - indexed for MEDLINE]Related articles

Drug-target network.

Yildirim MA, Goh KI, Cusick ME, Barabási AL, Vidal M.

Nat Biotechnol. 2007 Oct;25(10):1119-26.PMID: 17921997 [PubMed - indexed for MEDLINE]Related articles

The minimum information required for reporting a molecular interaction experiment (MIMIx).

Orchard S, Salwinski L, Kerrien S, Montecchi-Palazzi L, Oesterheld M, Stümpflen V, Ceol A, Chatr-aryamontri A, Armstrong J, Woollard P, Salama JJ, Moore S, Wojcik J, Bader GD, Vidal M, Cusick ME, Gerstein M, Gavin AC, Superti-Furga G, Greenblatt J, Bader J, Uetz P, Tyers M, Legrain P, Fields S, Mulder N, Gilson M, Niepmann M, Burgoon L, De Las Rivas J, Prieto C, Perreau VM, Hogue C, Mewes HW, Apweiler R, Xenarios I, Eisenberg D, Cesareni G, Hermjakob H.

Nat Biotechnol. 2007 Aug;25(8):894-8. Review.PMID: 17687370 [PubMed - indexed for MEDLINE]Related articles

Fas-activated serine/threonine phosphoprotein (FAST) is a regulator of alternative splicing.

Simarro M, Mauger D, Rhee K, Pujana MA, Kedersha NL, Yamasaki S, Cusick ME, Vidal M, Garcia-Blanco MA, Anderson P.

Proc Natl Acad Sci U S A. 2007 Jul 3;104(27):11370-5. Epub 2007 Jun 25.PMID: 17592127 [PubMed - indexed for MEDLINE]Related articlesFree article

Confirmation of organized modularity in the yeast interactome.

Bertin N, Simonis N, Dupuy D, Cusick ME, Han JD, Fraser HB, Roth FP, Vidal M.

PLoS Biol. 2007 Jun;5(6):e153. No abstract available. PMID: 17564493 [PubMed - indexed for MEDLINE]Related articlesFree article

The human disease network.

Goh KI, Cusick ME, Valle D, Childs B, Vidal M, Barabási AL.

Proc Natl Acad Sci U S A. 2007 May 22;104(21):8685-90. Epub 2007 May 14.PMID: 17502601 [PubMed - indexed for MEDLINE]Related articlesFree article

Binasal visual field defects from simultaneous bilateral retinal infarctions in sickle cell disease.

Cusick M, Toma HS, Hwang TS, Brown JC, Miller NR, Adams NA.

Am J Ophthalmol. 2007 May;143(5):893-6.PMID: 17452185 [PubMed - indexed for MEDLINE]Related articles

Intravitreal anti-vascular endothelial growth factor therapy with pegaptanib for advanced von Hippel-Lindau disease of the retina.

Dahr SS, Cusick M, Rodriguez-Coleman H, Srivastava SK, Thompson DJ, Linehan WM, Ferris FL 3rd, Chew EY.

Retina. 2007 Feb;27(2):150-8.PMID: 17290195 [PubMed - indexed for MEDLINE]Related articles

hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes.

Lamesch P, Li N, Milstein S, Fan C, Hao T, Szabo G, Hu Z, Venkatesan K, Bethel G, Martin P, Rogers J, Lawlor S, McLaren S, Dricot A, Borick H, Cusick ME, Vandenhaute J, Dunham I, Hill DE, Vidal M.

Genomics. 2007 Mar;89(3):307-15. Epub 2007 Jan 5.PMID: 17207965 [PubMed - indexed for MEDLINE]Related articles

QUICKstep and GS-TAP: new moves for protein-interaction analysis.

Braun P, Cusick ME, Vidal M.

Nat Methods. 2006 Dec;3(12):975-6. No abstract available. Erratum in: Nat Methods. 2007 Jan;4(1):103. PMID: 17117154 [PubMed - indexed for MEDLINE]Related articles

Anatomical and visual results of vitreoretinal surgery for stage 5 retinopathy of prematurity.

Cusick M, Charles MK, Agrón E, Sangiovanni JP, Ferris FL 3rd, Charles S.

Retina. 2006 Sep;26(7):729-35.PMID: 16963843 [PubMed - indexed for MEDLINE]Related articles

Intrinsic disorder is a common feature of hub proteins from four eukaryotic interactomes.

Haynes C, Oldfield CJ, Ji F, Klitgord N, Cusick ME, Radivojac P, Uversky VN, Vidal M, Iakoucheva LM.

PLoS Comput Biol. 2006 Aug 4;2(8):e100. Epub 2006 Jun 23.PMID: 16884331 [PubMed - indexed for MEDLINE]Related articlesFree article

Plasma membrane calcium pumps in mouse olfactory sensory neurons.

Weeraratne SD, Valentine M, Cusick M, Delay R, Van Houten JL.

Chem Senses. 2006 Oct;31(8):725-30. Epub 2006 Jul 19.PMID: 16855061 [PubMed - indexed for MEDLINE]Related articlesFree article

Yeast Protein Interactome topology provides framework for coordinated-functionality.

Valente AX, Cusick ME.

Nucleic Acids Res. 2006 May 22;34(9):2812-9. Print 2006.PMID: 16717286 [PubMed - indexed for MEDLINE]Related articlesFree article

Computer program to assist pharmacy management of an inpatient warfarin dosing service.

Schneider BL, Gulseth MP, Cusick MA, Sisson DC, Tomsche JJ.

Am J Health Syst Pharm. 2005 Nov 15;62(22):2393-6. No abstract available. PMID: 16278331 [PubMed - indexed for MEDLINE]Related articles

Towards a proteome-scale map of the human protein-protein interaction network.

Rual JF, Venkatesan K, Hao T, Hirozane-Kishikawa T, Dricot A, Li N, Berriz GF, Gibbons FD, Dreze M, Ayivi-Guedehoussou N, Klitgord N, Simon C, Boxem M, Milstein S, Rosenberg J, Goldberg DS, Zhang LV, Wong SL, Franklin G, Li S, Albala JS, Lim J, Fraughton C, Llamosas E, Cevik S, Bex C, Lamesch P, Sikorski RS, Vandenhaute J, Zoghbi HY, Smolyar A, Bosak S, Sequerra R, Doucette-Stamm L, Cusick ME, Hill DE, Roth FP, Vidal M.

Nature. 2005 Oct 20;437(7062):1173-8. Epub 2005 Sep 28.PMID: 16189514 [PubMed - indexed for MEDLINE]Related articles

Interactome: gateway into systems biology.

Cusick ME, Klitgord N, Vidal M, Hill DE.

Hum Mol Genet. 2005 Oct 15;14 Spec No. 2:R171-81. Epub 2005 Sep 14. Review.PMID: 16162640 [PubMed - indexed for MEDLINE]Related articlesFree article

A novel acetabular alignment guide for THR using selective anatomic landmarks on the pelvis.

DeChenne CL, Jayaram U, Lovell T, Dong N, Cusick M.

J Biomech. 2005 Sep;38(9):1902-8.PMID: 16023479 [PubMed - indexed for MEDLINE]Related articles

Effect of sampling on topology predictions of protein-protein interaction networks.

Han JD, Dupuy D, Bertin N, Cusick ME, Vidal M.

Nat Biotechnol. 2005 Jul;23(7):839-44.PMID: 16003372 [PubMed - indexed for MEDLINE]Related articles

Central visual function and the NEI-VFQ-25 near and distance activities subscale scores in people with type 1 and 2 diabetes.

Cusick M, SanGiovanni JP, Chew EY, Csaky KG, Hall-Shimel K, Reed GF, Caruso RC, Ferris FL 3rd.

Am J Ophthalmol. 2005 Jun;139(6):1042-50.PMID: 15953434 [PubMed - indexed for MEDLINE]Related articles

Effects of altered amygdalar neuropeptide Y expression on anxiety-related behaviors.

Primeaux SD, Wilson SP, Cusick MC, York DA, Wilson MA.

Neuropsychopharmacology. 2005 Sep;30(9):1589-97.PMID: 15770236 [PubMed - indexed for MEDLINE]Related articlesFree article

Associations of mortality and diabetes complications in patients with type 1 and type 2 diabetes: early treatment diabetic retinopathy study report no. 27.

Cusick M, Meleth AD, Agrón E, Fisher MR, Reed GF, Knatterud GL, Barton FB, Davis MD, Ferris FL 3rd, Chew EY; Early Treatment Diabetc Retinopathy Study Research Group.

Diabetes Care. 2005 Mar;28(3):617-25.PMID: 15735198 [PubMed - indexed for MEDLINE]Related articlesFree article

Human ORFeome version 1.1: a platform for reverse proteomics.

Rual JF, Hirozane-Kishikawa T, Hao T, Bertin N, Li S, Dricot A, Li N, Rosenberg J, Lamesch P, Vidalain PO, Clingingsmith TR, Hartley JL, Esposito D, Cheo D, Moore T, Simmons B, Sequerra R, Bosak S, Doucette-Stamm L, Le Peuch C, Vandenhaute J, Cusick ME, Albala JS, Hill DE, Vidal M.

Genome Res. 2004 Oct;14(10B):2128-35.PMID: 15489335 [PubMed - indexed for MEDLINE]Related articlesFree article

Risk factors for renal replacement therapy in the Early Treatment Diabetic Retinopathy Study (ETDRS), Early Treatment Diabetic Retinopathy Study Report No. 26.

Cusick M, Chew EY, Hoogwerf B, Agrón E, Wu L, Lindley A, Ferris FL 3rd; Early Treatment Diabetic Retinopathy Study Research Group.

Kidney Int. 2004 Sep;66(3):1173-9.PMID: 15327414 [PubMed - indexed for MEDLINE]Related articles

Evidence for dynamically organized modularity in the yeast protein-protein interaction network.

Han JD, Bertin N, Hao T, Goldberg DS, Berriz GF, Zhang LV, Dupuy D, Walhout AJ, Cusick ME, Roth FP, Vidal M.

Nature. 2004 Jul 1;430(6995):88-93. Epub 2004 Jun 9. Erratum in: Nature. 2004 Jul 15;430(6997):380. PMID: 15190252 [PubMed - indexed for MEDLINE]Related articles

A map of the interactome network of the metazoan C. elegans.

Li S, Armstrong CM, Bertin N, Ge H, Milstein S, Boxem M, Vidalain PO, Han JD, Chesneau A, Hao T, Goldberg DS, Li N, Martinez M, Rual JF, Lamesch P, Xu L, Tewari M, Wong SL, Zhang LV, Berriz GF, Jacotot L, Vaglio P, Reboul J, Hirozane-Kishikawa T, Li Q, Gabel HW, Elewa A, Baumgartner B, Rose DJ, Yu H, Bosak S, Sequerra R, Fraser A, Mango SE, Saxton WM, Strome S, Van Den Heuvel S, Piano F, Vandenhaute J, Sardet C, Gerstein M, Doucette-Stamm L, Gunsalus KC, Harper JW, Cusick ME, Roth FP, Hill DE, Vidal M.

Science. 2004 Jan 23;303(5657):540-3. Epub 2004 Jan 2.PMID: 14704431 [PubMed - indexed for MEDLINE]Related articlesFree article

Effects of aldose reductase inhibitors and galactose withdrawal on fluorescein angiographic lesions in galactose-fed dogs.

Cusick M, Chew EY, Ferris F 3rd, Cox TA, Chan CC, Kador PF.

Arch Ophthalmol. 2003 Dec;121(12):1745-51.PMID: 14662595 [PubMed - indexed for MEDLINE]Related articles

Histopathology and regression of retinal hard exudates in diabetic retinopathy after reduction of elevated serum lipid levels.

Cusick M, Chew EY, Chan CC, Kruth HS, Murphy RP, Ferris FL 3rd.

Ophthalmology. 2003 Nov;110(11):2126-33.PMID: 14597519 [PubMed - indexed for MEDLINE]Related articles

The yeast proteome database (YPD) and Caenorhabditis elegans proteome database (WormPD): comprehensive resources for the organization and comparison of model organism protein information.

Costanzo MC, Hogan JD, Cusick ME, Davis BP, Fancher AM, Hodges PE, Kondu P, Lengieza C, Lew-Smith JE, Lingner C, Roberg-Perez KJ, Tillberg M, Brooks JE, Garrels JI.

Nucleic Acids Res. 2000 Jan 1;28(1):73-6.PMID: 10592185 [PubMed - indexed for MEDLINE]Related articlesFree article

Riboregulation in Escherichia coli: DsrA RNA acts by RNA:RNA interactions at multiple loci.

Lease RA, Cusick ME, Belfort M.

Proc Natl Acad Sci U S A. 1998 Oct 13;95(21):12456-61.PMID: 9770507 [PubMed - indexed for MEDLINE]Related articlesFree article

Domain structure and RNA annealing activity of the Escherichia coli regulatory protein StpA.

Cusick ME, Belfort M.

Mol Microbiol. 1998 May;28(4):847-57.PMID: 9643551 [PubMed - indexed for MEDLINE]Related articles

Sequence of a segment of yeast chromosome II shows two novel genes, one almost entirely hydrophobic and the other extremely asparagine-serine rich.

Cusick ME.

Yeast. 1994 Sep;10(9):1251-6.PMID: 7754714 [PubMed - indexed for MEDLINE]Related articles

RNP1, a new ribonucleoprotein gene of the yeast Saccharomyces cerevisiae.

Cusick ME.

Nucleic Acids Res. 1994 Mar 11;22(5):869-77.PMID: 8139928 [PubMed - indexed for MEDLINE]Related articlesFree article

Purification and identification of two major single-stranded binding proteins of yeast Saccharomyces cerevisiae as ribosomal protein L4 and histone H2B.

Cusick ME.

Biochim Biophys Acta. 1994 Jan 18;1217(1):31-40.PMID: 8286414 [PubMed - indexed for MEDLINE]Related articles

Purification of ribonucleoproteins by a novel approach: isolation of the SSB1 ribonucleoprotein from yeast and demonstration that it has no role in mRNA splicing.

Cusick ME.

Biochim Biophys Acta. 1992 Dec 29;1171(2):176-86.PMID: 1482680 [PubMed - indexed for MEDLINE]Related articles