PubMed

Gene- or region-based analysis of genome-wide association studies.

Beyene J, Tritchler D, Asimit JL, Hamid JS.

Genet Epidemiol. 2009 Nov 18;33(S1):S105-S110. [Epub ahead of print]PMID: 19924708 [PubMed - as supplied by publisher]Related articles

Using the ratio of means as the effect size measure in combining results of microarray experiments.

Hu P, Greenwood CM, Beyene J.

BMC Syst Biol. 2009 Nov 5;3(1):106. [Epub ahead of print]PMID: 19891778 [PubMed - as supplied by publisher]Related articlesFree article

Preterm birth and low birth weight among in vitro fertilization twins: A systematic review and meta-analyses.

McDonald SD, Han Z, Mulla S, Ohlsson A, Beyene J, Murphy KE; on behalf of the Knowledge Synthesis Group.

Eur J Obstet Gynecol Reprod Biol. 2009 Oct 13. [Epub ahead of print]PMID: 19833428 [PubMed - as supplied by publisher]Related articles

Association between tumor necrosis factor-alpha promoter -308 A/G polymorphism and susceptibility to sepsis and sepsis mortality: A systematic review and meta-analysis.

Teuffel O, Ethier MC, Beyene J, Sung L.

Crit Care Med. 2009 Sep 28. [Epub ahead of print]PMID: 19789454 [PubMed - as supplied by publisher]Related articles

Determining relative importance of variables in developing and validating predictive models.

Beyene J, Atenafu EG, Hamid JS, To T, Sung L.

BMC Med Res Methodol. 2009 Sep 14;9:64.PMID: 19751506 [PubMed - in process]Related articlesFree article

Gene expression using microarrays in transplant recipients at risk of EBV lymphoproliferation after organ transplantation: Preliminary proof-of-concept.

Allen U, Barton M, Beyene J, Hu P, Khodai-Booran N, Hébert D, Dipchand A, Ng V, Solomon M, Grant D, Fecteau A, Ngan B, Read S, Zielenska M, Weitzman S.

Pediatr Transplant. 2009 Sep 7. [Epub ahead of print]PMID: 19735433 [PubMed - as supplied by publisher]Related articles

Heterogeneous effects of fructose on blood lipids in individuals with type 2 diabetes: systematic review and meta-analysis of experimental trials in humans.

Sievenpiper JL, Carleton AJ, Chatha S, Jiang HY, de Souza RJ, Beyene J, Kendall CW, Jenkins DJ.

Diabetes Care. 2009 Oct;32(10):1930-7. Epub 2009 Jul 10.PMID: 19592634 [PubMed - in process]Related articles

Oral versus intravenous steroids for treatment of relapses in multiple sclerosis.

Burton JM, O'Connor PW, Hohol M, Beyene J.

Cochrane Database Syst Rev. 2009 Jul 8;(3):CD006921. Review.PMID: 19588409 [PubMed - indexed for MEDLINE]Related articles

Preterm birth and low birth weight among in vitro fertilization singletons: a systematic review and meta-analyses.

McDonald SD, Han Z, Mulla S, Murphy KE, Beyene J, Ohlsson A; Knowledge Synthesis Group.

Eur J Obstet Gynecol Reprod Biol. 2009 Oct;146(2):138-48. Epub 2009 Jul 4.PMID: 19577836 [PubMed - in process]Related articles

A meta-analysis of the effect of antibody therapy for the prevention of severe respiratory syncytial virus infection.

Morris SK, Dzolganovski B, Beyene J, Sung L.

BMC Infect Dis. 2009 Jul 5;9:106.PMID: 19575815 [PubMed - indexed for MEDLINE]Related articlesFree article

A multivariate growth curve model for ranking genes in replicated time course microarray data.

Hamid JS, Beyene J.

Stat Appl Genet Mol Biol. 2009;8(1):Article33. Epub 2009 Jul 1.PMID: 19572832 [PubMed - indexed for MEDLINE]Related articlesFree article

Filtering genes for cluster and network analysis.

Tritchler D, Parkhomenko E, Beyene J.

BMC Bioinformatics. 2009 Jun 23;10:193.PMID: 19549335 [PubMed - indexed for MEDLINE]Related articlesFree article

Comparison of brachial and carotid artery ultrasound for assessing extent of subclinical atherosclerosis in HIV: a prospective cohort study.

Odueyungbo A, Smieja M, Thabane L, Smaill F, Gough K, Gill J, Anderson T, Elston D, Smith S, Beyene J, Lonn E.

AIDS Res Ther. 2009 Jun 11;6:11.PMID: 19519884 [PubMed - in process]Related articlesFree article

Bone marrow cells from patients with Shwachman-Diamond syndrome abnormally express genes involved in ribosome biogenesis and RNA processing.

Rujkijyanont P, Adams SL, Beyene J, Dror Y.

Br J Haematol. 2009 Jun;145(6):806-15. Epub 2009 May 6.PMID: 19438500 [PubMed - indexed for MEDLINE]Related articles

Application of biomedical informatics to chronic pediatric diseases: a systematic review.

Moeinedin F, Moineddin R, Jadad AR, Hamid JS, To T, Beyene J.

BMC Med Inform Decis Mak. 2009 May 5;9:22. Review.PMID: 19416540 [PubMed - indexed for MEDLINE]Related articlesFree article

TNF-alpha-308 G/A polymorphism and responsiveness to TNF-alpha blockade therapy in moderate to severe rheumatoid arthritis: a systematic review and meta-analysis.

O'Rielly DD, Roslin NM, Beyene J, Pope A, Rahman P.

Pharmacogenomics J. 2009 Jun;9(3):161-7. Epub 2009 Apr 14. Review.PMID: 19365401 [PubMed - indexed for MEDLINE]Related articles

Can a community evidence-based asthma care program improve clinical outcomes?: a longitudinal study.

To T, Cicutto L, Degani N, McLimont S, Beyene J.

Med Care. 2008 Dec;46(12):1257-66.PMID: 19300316 [PubMed - indexed for MEDLINE]Related articles

Sparse canonical correlation analysis with application to genomic data integration.

Parkhomenko E, Tritchler D, Beyene J.

Stat Appl Genet Mol Biol. 2009 Jan;8(1):Article 1. Epub 2009 Jan 6.PMID: 19222376 [PubMed - indexed for MEDLINE]Related articlesFree article

Antenatal steroid therapy for fetal lung maturation: is there an association with childhood asthma?

Pole JD, Mustard CA, To T, Beyene J, Allen AC.

J Asthma. 2009 Feb;46(1):47-52.PMID: 19191137 [PubMed - indexed for MEDLINE]Related articles

Rosiglitazone: can meta-analysis accurately estimate excess cardiovascular risk given the available data? Re-analysis of randomized trials using various methodologic approaches.

Friedrich JO, Beyene J, Adhikari NK.

BMC Res Notes. 2009 Jan 10;2:5.PMID: 19134216 [PubMed - in process]Related articlesFree article

A small p-value from an observed data is not evidence of adequate power for future similar-sized studies: a cautionary note.

Atenafu EG, Hamid JS, Stephens D, To T, Beyene J.

Contemp Clin Trials. 2009 Mar;30(2):155-7. Epub 2008 Dec 3.PMID: 19063996 [PubMed - in process]Related articles

Indicators of pain in neonates at risk for neurological impairment.

Stevens B, McGrath P, Dupuis A, Gibbins S, Beyene J, Breau L, Camfield C, Finley GA, Franck LS, Howlett A, Johnston C, McKeever P, O'Brien K, Ohlsson A, Yamada J.

J Adv Nurs. 2009 Feb;65(2):285-96. Epub 2008 Nov 22.PMID: 19040693 [PubMed - indexed for MEDLINE]Related articles

Association between hematologic findings and brain injury due to neonatal hypoxic-ischemic encephalopathy.

Shah V, Beyene J, Shah P, Perlman M.

Am J Perinatol. 2009 Apr;26(4):295-302. Epub 2008 Nov 21.PMID: 19031351 [PubMed - indexed for MEDLINE]Related articles

Hematopoietic colony-stimulating factor priming does not influence survival in acute myeloid leukemia: a meta-analysis of randomized trials.

Sung L, Alibhai SM, Beyene J, Gamis A, Almeida R, Smith S, Aplenc R.

Leukemia. 2009 Apr;23(4):811-3. Epub 2008 Nov 6. No abstract available. PMID: 18987652 [PubMed - indexed for MEDLINE]Related articles

Estimating number of clusters based on a general similarity matrix with application to microarray data.

Fallah S, Tritchler D, Beyene J.

Stat Appl Genet Mol Biol. 2008;7(1):Article24. Epub 2008 Aug 2.PMID: 18764773 [PubMed - indexed for MEDLINE]Related articlesFree article

Identifying subpopulations for subgroup analysis in a longitudinal clinical trial.

Moineddin R, Butt DA, Tomlinson G, Beyene J.

Contemp Clin Trials. 2008 Nov;29(6):817-22. Epub 2008 Jul 25.PMID: 18718556 [PubMed - indexed for MEDLINE]Related articles

Clinical and genetic analysis of unclassifiable inherited bone marrow failure syndromes.

Teo JT, Klaassen R, Fernandez CV, Yanofsky R, Wu J, Champagne J, Silva M, Lipton JH, Brossard J, Samson Y, Abish S, Steele M, Ali K, Athale U, Jardine L, Hand JP, Tsangaris E, Odame I, Beyene J, Dror Y.

Pediatrics. 2008 Jul;122(1):e139-48.PMID: 18595958 [PubMed - indexed for MEDLINE]Related articlesFree article

Effectiveness of sucrose analgesia in newborns undergoing painful medical procedures.

Taddio A, Shah V, Hancock R, Smith RW, Stephens D, Atenafu E, Beyene J, Koren G, Stevens B, Katz J.

CMAJ. 2008 Jul 1;179(1):37-43.PMID: 18591525 [PubMed - indexed for MEDLINE]Related articlesFree article

Changes in physiological and behavioural pain indicators over time in preterm and term infants at risk for neurologic impairment.

Gibbins S, Stevens B, McGrath P, Dupuis A, Yamada J, Beyene J, Breau L, Camfield C, Finley GA, Franck L, Johnston C, McKeever P, O'Brien K, Ohlsson A.

Early Hum Dev. 2008 Nov;84(11):731-8. Epub 2008 Jun 18.PMID: 18565699 [PubMed - indexed for MEDLINE]Related articles

Quantifying the volume of documented clinical information in critical illness.

Manor-Shulman O, Beyene J, Frndova H, Parshuram CS.

J Crit Care. 2008 Jun;23(2):245-50. Epub 2007 Dec 11.PMID: 18538218 [PubMed - indexed for MEDLINE]Related articles

The ratio of means method as an alternative to mean differences for analyzing continuous outcome variables in meta-analysis: a simulation study.

Friedrich JO, Adhikari NK, Beyene J.

BMC Med Res Methodol. 2008 May 21;8:32.PMID: 18492289 [PubMed - indexed for MEDLINE]Related articlesFree article

Usefulness of improvement in walking distance versus peak oxygen uptake in predicting prognosis after myocardial infarction and/or coronary artery bypass grafting in men.

Kavanagh T, Hamm LF, Beyene J, Mertens DJ, Kennedy J, Campbell R, Fallah S, Shephard RJ.

Am J Cardiol. 2008 May 15;101(10):1423-7. Epub 2008 Mar 17.PMID: 18471453 [PubMed - indexed for MEDLINE]Related articles

Sex, age and generation effects on genome-wide linkage analysis of gene expression in transformed lymphoblasts.

Rangrej J, Beyene J, Hu P, Paterson AD.

BMC Proc. 2007;1 Suppl 1:S92. Epub 2007 Dec 18.PMID: 18466596 [PubMed - in process]Related articlesFree article

Identifying cis- and trans-acting single-nucleotide polymorphisms controlling lymphocyte gene expression in humans.

Hu P, Lan H, Xu W, Beyene J, Greenwood CM.

BMC Proc. 2007;1 Suppl 1:S7. Epub 2007 Dec 18.PMID: 18466571 [PubMed - in process]Related articlesFree article

Impact of normalization and filtering on linkage analysis of gene expression data.

Beyene J, Hu P, Parkhomenko E, Tritchler D.

BMC Proc. 2007;1 Suppl 1:S150. Epub 2007 Dec 18.PMID: 18466495 [PubMed - in process]Related articlesFree article

Genome-wide sparse canonical correlation of gene expression with genotypes.

Parkhomenko E, Tritchler D, Beyene J.

BMC Proc. 2007;1 Suppl 1:S119. Epub 2007 Dec 18.PMID: 18466460 [PubMed - in process]Related articlesFree article

Genetic Analysis Workshop 15: gene expression analysis and approaches to detecting multiple functional loci.

Cordell HJ, de Andrade M, Babron MC, Bartlett CW, Beyene J, Bickeböller H, Culverhouse R, Cupples LA, Daw EW, Dupuis J, Falk CT, Ghosh S, Goddard KA, Goode EL, Hauser ER, Martin LJ, Martinez M, North KE, Saccone NL, Schmidt S, Tapper W, Thomas D, Tritchler D, Vieland VJ, Wijsman EM, Wilcox MA, Witte JS, Yang Q, Ziegler A, Almasy L, Maccluer JW.

BMC Proc. 2007;1 Suppl 1:S1. Epub 2007 Dec 18. No abstract available. PMID: 18466438 [PubMed - in process]Related articlesFree article

The effect of tobacco exposure on maternal and fetal thyroid function.

McDonald SD, Walker MC, Ohlsson A, Murphy KE, Beyene J, Perkins SL.

Eur J Obstet Gynecol Reprod Biol. 2008 Sep;140(1):38-42. Epub 2008 Apr 18.PMID: 18395957 [PubMed - indexed for MEDLINE]Related articles

SBDS-deficient cells undergo accelerated apoptosis through the Fas-pathway.

Rujkijyanont P, Watanabe K, Ambekar C, Wang H, Schimmer A, Beyene J, Dror Y.

Haematologica. 2008 Mar;93(3):363-71. Epub 2008 Feb 11.PMID: 18268284 [PubMed - indexed for MEDLINE]Related articlesFree article

Quality of randomized clinical trials in juvenile idiopathic arthritis.

Abrahamyan L, Johnson SR, Beyene J, Shah PS, Feldman BM.

Rheumatology (Oxford). 2008 May;47(5):640-5. Epub 2008 Feb 2.PMID: 18245800 [PubMed - indexed for MEDLINE]Related articles

Pain behaviours in Extremely Low Gestational Age infants.

Gibbins S, Stevens B, Beyene J, Chan PC, Bagg M, Asztalos E.

Early Hum Dev. 2008 Jul;84(7):451-8. Epub 2008 Feb 19.PMID: 18243593 [PubMed - indexed for MEDLINE]Related articles

Fish-oil supplementation in patients with implantable cardioverter defibrillators: a meta-analysis.

Jenkins DJ, Josse AR, Beyene J, Dorian P, Burr ML, LaBelle R, Kendall CW, Cunnane SC.

CMAJ. 2008 Jan 15;178(2):157-64. Review.PMID: 18195289 [PubMed - indexed for MEDLINE]Related articlesFree article

Reliability of exercise testing and functional activity questionnaires in children with juvenile arthritis.

Stephens S, Singh-Grewal D, Bar-Or O, Beyene J, Cameron B, Leblanc CM, Schneider R, Schneiderman-Walker J, Selvadurai H, Silverman E, Spiegel L, Tse SM, Wright V, Feldman BM.

Arthritis Rheum. 2007 Dec 15;57(8):1446-52.PMID: 18050186 [PubMed - indexed for MEDLINE]Related articlesFree article

Multivariate analysis of complex gene expression and clinical phenotypes with genetic marker data.

Beyene J, Tritchler D, Bull SB, Cartier KC, Jonasdottir G, Kraja AT, Li N, Nock NL, Parkhomenko E, Rao JS, Stein CM, Sutradhar R, Waaijenborg S, Wang KS, Wang Y, Wolkow P.

Genet Epidemiol. 2007;31 Suppl 1:S103-9. Review.PMID: 18046768 [PubMed - indexed for MEDLINE]Related articles

Inferior outcomes for overweight children undergoing allogeneic stem cell transplantation.

Bulley S, Gassas A, Dupuis LL, Aplenc R, Beyene J, Greenberg ML, Doyle JJ, Sung L.

Br J Haematol. 2008 Jan;140(2):214-7. Epub 2007 Nov 19.PMID: 18028482 [PubMed - indexed for MEDLINE]Related articles

Antenatal steroid therapy and childhood asthma: Is there a possible link?

Pole JD, Mustard CA, To T, Beyene J, Allen AC.

Med Hypotheses. 2008;70(5):981-9. Epub 2007 Oct 24.PMID: 17961931 [PubMed - indexed for MEDLINE]Related articles

The effects of vigorous exercise training on physical function in children with arthritis: a randomized, controlled, single-blinded trial.

Singh-Grewal D, Schneiderman-Walker J, Wright V, Bar-Or O, Beyene J, Selvadurai H, Cameron B, Laxer RM, Schneider R, Silverman ED, Spiegel L, Tse S, Leblanc C, Wong J, Stephens S, Feldman BM.

Arthritis Rheum. 2007 Oct 15;57(7):1202-10.PMID: 17907238 [PubMed - indexed for MEDLINE]Related articlesFree article

Meta-analysis: effect of prophylactic hematopoietic colony-stimulating factors on mortality and outcomes of infection.

Sung L, Nathan PC, Alibhai SM, Tomlinson GA, Beyene J.

Ann Intern Med. 2007 Sep 18;147(6):400-11.PMID: 17876022 [PubMed - indexed for MEDLINE]Related articlesFree article

Predictors of lipid abnormalities in children with new-onset systemic lupus erythematosus.

Tyrrell PN, Beyene J, Benseler SM, Sarkissian T, Silverman ED.

J Rheumatol. 2007 Oct;34(10):2112-9. Epub 2007 Sep 1.PMID: 17787042 [PubMed - indexed for MEDLINE]Related articles

Features at presentation predict children with acute lymphoblastic leukemia at low risk for tumor lysis syndrome.

Truong TH, Beyene J, Hitzler J, Abla O, Maloney AM, Weitzman S, Sung L.

Cancer. 2007 Oct 15;110(8):1832-9.PMID: 17724682 [PubMed - indexed for MEDLINE]Related articlesFree article