PubMed

The role of molecular modeling in the design of analogues of the fungicidal natural products crocacins A and D.

Crowley PJ, Berry EA, Cromartie T, Daldal F, Godfrey CR, Lee DW, Phillips JE, Taylor A, Viner R.

Bioorg Med Chem. 2008 Dec 15;16(24):10345-55. Epub 2008 Oct 17.PMID: 18996700 [PubMed - indexed for MEDLINE]Related articlesFree article

The effect of glucose ingestion on inflammation and oxidative stress in obese individuals.

Manning PJ, Sutherland WH, Walker RJ, de Jong SA, Berry EA.

Metabolism. 2008 Oct;57(10):1345-9.PMID: 18803936 [PubMed - indexed for MEDLINE]Related articles

The effect of rosiglitazone on oxidative stress and insulin resistance in overweight individuals.

Manning PJ, Sutherland WH, Walker RJ, Williams SM, de Jong SA, Berry EA.

Diabetes Res Clin Pract. 2008 Aug;81(2):209-15. Epub 2008 Jun 9.PMID: 18541328 [PubMed - indexed for MEDLINE]Related articles

Bis-histidine-coordinated hemes in four-helix bundles: how the geometry of the bundle controls the axial imidazole plane orientations in transmembrane cytochromes of mitochondrial complexes II and III and related proteins.

Berry EA, Walker FA.

J Biol Inorg Chem. 2008 May;13(4):481-98. Review.PMID: 18418633 [PubMed - indexed for MEDLINE]Related articles

X-Ray absorption studies of Zn2+ binding sites in bacterial, avian, and bovine cytochrome bc1 complexes.

Giachini L, Francia F, Veronesi G, Lee DW, Daldal F, Huang LS, Berry EA, Cocco T, Papa S, Boscherini F, Venturoli G.

Biophys J. 2007 Oct 15;93(8):2934-51. Epub 2007 Jun 15.PMID: 17573435 [PubMed - indexed for MEDLINE]Related articlesFree article

Plasmon waveguide resonance spectroscopic evidence for differential binding of oxidized and reduced Rhodobacter capsulatus cytochrome c2 to the cytochrome bc1 complex mediated by the conformation of the Rieske iron-sulfur protein.

Devanathan S, Salamon Z, Tollin G, Fitch JC, Meyer TE, Berry EA, Cusanovich MA.

Biochemistry. 2007 Jun 19;46(24):7138-45. Epub 2007 May 22.PMID: 17516628 [PubMed - indexed for MEDLINE]Related articlesFree article

Vitamin E supplementation and plasma 8-isoprostane and adiponectin in overweight subjects.

Sutherland WH, Manning PJ, Walker RJ, de Jong SA, Ryalls AR, Berry EA.

Obesity (Silver Spring). 2007 Feb;15(2):386-91.PMID: 17299112 [PubMed - indexed for MEDLINE]Related articles

Effect of an intramammary teat seal and dry cow antibiotic in relation to dry period length on postpartum mastitis.

Berry EA, Hillerton JE.

J Dairy Sci. 2007 Feb;90(2):760-5. Erratum in: J Dairy Sci. 2007 Aug;90(8):4004. PMID: 17235153 [PubMed - indexed for MEDLINE]Related articlesFree article

Crystallographic studies of the binding of ligands to the dicarboxylate site of Complex II, and the identity of the ligand in the "oxaloacetate-inhibited" state.

Huang LS, Shen JT, Wang AC, Berry EA.

Biochim Biophys Acta. 2006 Sep-Oct;1757(9-10):1073-83. Epub 2006 Jul 12.PMID: 16935256 [PubMed - indexed for MEDLINE]Related articlesFree article

3-nitropropionic acid is a suicide inhibitor of mitochondrial respiration that, upon oxidation by complex II, forms a covalent adduct with a catalytic base arginine in the active site of the enzyme.

Huang LS, Sun G, Cobessi D, Wang AC, Shen JT, Tung EY, Anderson VE, Berry EA.

J Biol Chem. 2006 Mar 3;281(9):5965-72. Epub 2005 Dec 21.PMID: 16371358 [PubMed - indexed for MEDLINE]Related articlesFree article

Milking machine test survey of UK herds.

Berry EA, Scrivens M, Hillerton JE.

Vet Rec. 2005 Jul 30;157(5):147-8. No abstract available. PMID: 16055663 [PubMed - indexed for MEDLINE]Related articles

X-Ray Structure of Rhodobacter Capsulatus Cytochrome bc (1): Comparison with its Mitochondrial and Chloroplast Counterparts.

Berry EA, Huang LS, Saechao LK, Pon NG, Valkova-Valchanova M, Daldal F.

Photosynth Res. 2004;81(3):251-75.PMID: 16034531 [PubMed - as supplied by publisher]Related articles

Binding of the respiratory chain inhibitor antimycin to the mitochondrial bc1 complex: a new crystal structure reveals an altered intramolecular hydrogen-bonding pattern.

Huang LS, Cobessi D, Tung EY, Berry EA.

J Mol Biol. 2005 Aug 19;351(3):573-97.PMID: 16024040 [PubMed - indexed for MEDLINE]Related articlesFree article

Treating mastitis in the cow--a tradition or an archaism.

Hillerton JE, Berry EA.

J Appl Microbiol. 2005;98(6):1250-5. Review. No abstract available. PMID: 15916638 [PubMed - indexed for MEDLINE]Related articles

Crystallization of mitochondrial respiratory complex II from chicken heart: a membrane-protein complex diffracting to 2.0 A.

Huang LS, Borders TM, Shen JT, Wang CJ, Berry EA.

Acta Crystallogr D Biol Crystallogr. 2005 Apr;61(Pt 4):380-7. Epub 2005 Mar 24.PMID: 15805592 [PubMed - indexed for MEDLINE]Related articlesFree article

Decision tree analysis to evaluate dry cow strategies under UK conditions.

Berry EA, Hogeveen H, Hillerton JE.

J Dairy Res. 2004 Nov;71(4):409-18.PMID: 15605707 [PubMed - indexed for MEDLINE]Related articles

Errors associated with milk cell counting.

Hillerton JE, Berry EA, Gravenor MB, Middleton N.

Vet Rec. 2004 Oct 9;155(15):445-8.PMID: 15518404 [PubMed - indexed for MEDLINE]Related articles

Reduced bio-basis function neural networks for protease cleavage site prediction.

Yang ZR, Berry EA.

J Bioinform Comput Biol. 2004 Sep;2(3):511-31.PMID: 15359424 [PubMed - indexed for MEDLINE]Related articles

Effect of high-dose vitamin E on insulin resistance and associated parameters in overweight subjects.

Manning PJ, Sutherland WH, Walker RJ, Williams SM, De Jong SA, Ryalls AR, Berry EA.

Diabetes Care. 2004 Sep;27(9):2166-71.PMID: 15333479 [PubMed - indexed for MEDLINE]Related articlesFree article

Reduced bio basis function neural network for identification of protein phosphorylation sites: comparison with pattern recognition algorithms.

Berry EA, Dalby AR, Yang ZR.

Comput Biol Chem. 2004 Feb;28(1):75-85.PMID: 15022646 [PubMed - indexed for MEDLINE]Related articles

Prophylactic effects of two selective dry cow strategies accounting for interdependence of quarter.

Berry EA, Johnston WT, Hillerton JE.

J Dairy Sci. 2003 Dec;86(12):3912-9.PMID: 14740826 [PubMed - indexed for MEDLINE]Related articlesFree article

Orientation of the g-tensor axes of the Rieske subunit in the cytochrome bc1 complex.

Bowman MK, Berry EA, Roberts AG, Kramer DM.

Biochemistry. 2004 Jan 20;43(2):430-6.PMID: 14717597 [PubMed - indexed for MEDLINE]Related articles

Observations concerning the quinol oxidation site of the cytochrome bc1 complex.

Berry EA, Huang LS.

FEBS Lett. 2003 Nov 27;555(1):13-20. Review.PMID: 14630312 [PubMed - indexed for MEDLINE]Related articles

Amphipols: polymeric surfactants for membrane biology research.

Popot JL, Berry EA, Charvolin D, Creuzenet C, Ebel C, Engelman DM, Flötenmeyer M, Giusti F, Gohon Y, Hong Q, Lakey JH, Leonard K, Shuman HA, Timmins P, Warschawski DE, Zito F, Zoonens M, Pucci B, Tribet C.

Cell Mol Life Sci. 2003 Aug;60(8):1559-74. Review.PMID: 14513831 [PubMed - indexed for MEDLINE]Related articles

Exploration of ligands to the Qi site semiquinone in the bc1 complex using high-resolution EPR.

Kolling DR, Samoilova RI, Holland JT, Berry EA, Dikanov SA, Crofts AR.

J Biol Chem. 2003 Oct 10;278(41):39747-54. Epub 2003 Jul 21.PMID: 12874282 [PubMed - indexed for MEDLINE]Related articlesFree article

The management and treatment of environmental streptococcal mastitis.

Hillerton JE, Berry EA.

Vet Clin North Am Food Anim Pract. 2003 Mar;19(1):157-69. Review.PMID: 12682940 [PubMed - indexed for MEDLINE]Related articles

Mastitis and somatic cell counts.

Berry EA, Hillerton JE, Blanshard M.

Vet Rec. 2003 Mar 22;152(12):375. No abstract available. PMID: 12678268 [PubMed - indexed for MEDLINE]Related articles

The effect of an intramammary teat seal on new intramammary infections.

Berry EA, Hillerton JE.

J Dairy Sci. 2002 Oct;85(10):2512-20.PMID: 12416803 [PubMed - indexed for MEDLINE]Related articlesFree article

The interaction of atovaquone with the P. carinii cytochrome bc1 complex.

Meshnick SR, Berry EA, Nett J, Kazanjian P, Trumpower B.

J Eukaryot Microbiol. 2001;Suppl:169S-171S. No abstract available. PMID: 11906048 [PubMed - indexed for MEDLINE]Related articles

The effect of selective dry cow treatment on new intramammary infections.

Berry EA, Hillerton JE.

J Dairy Sci. 2002 Jan;85(1):112-21.PMID: 11860103 [PubMed - indexed for MEDLINE]Related articlesFree article

The 2.6 A resolution structure of Rhodobacter capsulatus bacterioferritin with metal-free dinuclear site and heme iron in a crystallographic 'special position'.

Cobessi D, Huang LS, Ban M, Pon NG, Daldal F, Berry EA.

Acta Crystallogr D Biol Crystallogr. 2002 Jan;58(Pt 1):29-38. Epub 2001 Dec 21.PMID: 11752777 [PubMed - indexed for MEDLINE]Related articles

Crystal structure of activated CheY. Comparison with other activated receiver domains.

Lee SY, Cho HS, Pelton JG, Yan D, Berry EA, Wemmer DE.

J Biol Chem. 2001 May 11;276(19):16425-31. Epub 2001 Feb 13.PMID: 11279165 [PubMed - indexed for MEDLINE]Related articlesFree article

Mitochondrial cytochrome bc1 complex.

Zhang Z, Berry EA, Huang LS, Kim SH.

Subcell Biochem. 2000;35:541-80. Review. No abstract available. PMID: 11192733 [PubMed - indexed for MEDLINE]Related articles

Leishmania tarentolae: a parallel isolation of cytochrome bc(1) and cytochrome c oxidase.

Horváth A, Berry EA, Huang LS, Maslov DA.

Exp Parasitol. 2000 Nov;96(3):160-7.PMID: 11162366 [PubMed - indexed for MEDLINE]Related articles

Crystal structure of an activated response regulator bound to its target.

Lee SY, Cho HS, Pelton JG, Yan D, Henderson RK, King DS, Huang L, Kustu S, Berry EA, Wemmer DE.

Nat Struct Biol. 2001 Jan;8(1):52-6.PMID: 11135671 [PubMed - indexed for MEDLINE]Related articles

Crystallographic location of two Zn(2+)-binding sites in the avian cytochrome bc(1) complex.

Berry EA, Zhang Z, Bellamy HD, Huang L.

Biochim Biophys Acta. 2000 Aug 15;1459(2-3):440-8.PMID: 11004461 [PubMed - indexed for MEDLINE]Related articles

Structure and function of cytochrome bc complexes.

Berry EA, Guergova-Kuras M, Huang LS, Crofts AR.

Annu Rev Biochem. 2000;69:1005-75. Review.PMID: 10966481 [PubMed - indexed for MEDLINE]Related articles

Structures of quinone-binding sites in bc complexes: functional implications.

Berry EA, Zhang Z, Huang LS, Kim SH.

Biochem Soc Trans. 1999 Aug;27(4):565-72. Review. No abstract available. PMID: 10917643 [PubMed - indexed for MEDLINE]Related articles

X-ray structure of a truncated form of cytochrome f from chlamydomonas reinhardtii.

Chi YI, Huang LS, Zhang Z, Fernández-Velasco JG, Berry EA.

Biochemistry. 2000 Jul 4;39(26):7689-701.PMID: 10869174 [PubMed - indexed for MEDLINE]Related articles

Characterization of cytochrome b from Toxoplasma gondii and Q(o) domain mutations as a mechanism of atovaquone-resistance.

McFadden DC, Tomavo S, Berry EA, Boothroyd JC.

Mol Biochem Parasitol. 2000 Apr 30;108(1):1-12.PMID: 10802314 [PubMed - indexed for MEDLINE]Related articles

Translation of the edited mRNA for cytochrome b in trypanosome mitochondria.

Horváth A, Berry EA, Maslov DA.

Science. 2000 Mar 3;287(5458):1639-40.PMID: 10698736 [PubMed - indexed for MEDLINE]Related articlesFree article

Air abrasion: an old technology reborn.

Berry EA 3rd, Eakle WS, Summitt JB.

Compend Contin Educ Dent. 1999 Aug;20(8):751-4, 756, 758-9 passim; quiz 764.PMID: 10649950 [PubMed - indexed for MEDLINE]Related articles

Physicochemical aspects of the movement of the rieske iron sulfur protein during quinol oxidation by the bc(1) complex from mitochondria and photosynthetic bacteria.

Crofts AR, Hong S, Zhang Z, Berry EA.

Biochemistry. 1999 Nov 30;38(48):15827-39.PMID: 10625447 [PubMed - indexed for MEDLINE]Related articles

Mechanism of ubiquinol oxidation by the bc(1) complex: different domains of the quinol binding pocket and their role in the mechanism and binding of inhibitors.

Crofts AR, Barquera B, Gennis RB, Kuras R, Guergova-Kuras M, Berry EA.

Biochemistry. 1999 Nov 30;38(48):15807-26.PMID: 10625446 [PubMed - indexed for MEDLINE]Related articles

Mechanism of ubiquinol oxidation by the bc(1) complex: role of the iron sulfur protein and its mobility.

Crofts AR, Guergova-Kuras M, Huang L, Kuras R, Zhang Z, Berry EA.

Biochemistry. 1999 Nov 30;38(48):15791-806.PMID: 10625445 [PubMed - indexed for MEDLINE]Related articles

Structure of the avian mitochondrial cytochrome bc1 complex.

Berry EA, Huang LS, Zhang Z, Kim SH.

J Bioenerg Biomembr. 1999 Jun;31(3):177-90. Review.PMID: 10591524 [PubMed - indexed for MEDLINE]Related articles

Steered molecular dynamics simulation of the Rieske subunit motion in the cytochrome bc(1) complex.

Izrailev S, Crofts AR, Berry EA, Schulten K.

Biophys J. 1999 Oct;77(4):1753-68.PMID: 10512801 [PubMed - indexed for MEDLINE]Related articlesFree article

Pathways for proton release during ubihydroquinone oxidation by the bc(1) complex.

Crofts AR, Hong S, Ugulava N, Barquera B, Gennis R, Guergova-Kuras M, Berry EA.

Proc Natl Acad Sci U S A. 1999 Aug 31;96(18):10021-6.PMID: 10468555 [PubMed - indexed for MEDLINE]Related articlesFree article

Structure and function of the cytochrome bc1 complex of mitochondria and photosynthetic bacteria.

Crofts AR, Berry EA.

Curr Opin Struct Biol. 1998 Aug;8(4):501-9. Review.PMID: 9729743 [PubMed - indexed for MEDLINE]Related articles

Interactions between the cytochrome b, cytochrome c1, and Fe-S protein subunits at the ubihydroquinone oxidation site of the bc1 complex of Rhodobacter capsulatus.

Saribaş AS, Valkova-Valchanova M, Tokito MK, Zhang Z, Berry EA, Daldal F.

Biochemistry. 1998 Jun 2;37(22):8105-14.PMID: 9609705 [PubMed - indexed for MEDLINE]Related articles