sir-2.2 NAD-dependent protein deacylase sir-2.2 [Caenorhabditis elegans] - Gene

Summary

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Gene symbol: sir-2.2
Gene description: NAD-dependent protein deacylase sir-2.2
Primary source: WormBase:WBGene00004801
Locus tag: CELE_F46G10.7
See related: AllianceGenome:WB:WBGene00004801
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Caenorhabditis elegans (strain: Bristol N2)
Lineage: Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary: Predicted to enable deacetylase activity. Involved in innate immune response. Located in mitochondrion. Is expressed in several structures, including excretory cell; hypodermis; nervous system; non-striated muscle; and reproductive system. Orthologous to human SIRT4 (sirtuin 4). [provided by Alliance of Genome Resources, Apr 2022]
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Genomic context

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See sir-2.2 in Genome Data Viewer

Location:: chromosome: X

Exon count:: 8

Sequence:: Chromosome: X; NC_003284.9 (13328270..13331263)

Chromosome X - NC_003284.9 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003284.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

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Pathways from PubChem

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Markers

F46G10.7 (e-PCR)
- UniSTS:319358

Homology

Orthologs from OrthoDB

Gene Ontology Provided by WormBase

Function	Evidence Code	Pubs
enables NAD+ binding	IBA Inferred from Biological aspect of Ancestor more info
enables NAD+ binding	IEA Inferred from Electronic Annotation more info
enables NAD-dependent histone deacetylase activity	IBA Inferred from Biological aspect of Ancestor more info
enables NAD-dependent protein deacetylase activity	IEA Inferred from Electronic Annotation more info
enables metal ion binding	IEA Inferred from Electronic Annotation more info
enables protein lysine deacetylase activity	IEA Inferred from Electronic Annotation more info
enables transferase activity	IEA Inferred from Electronic Annotation more info
enables zinc ion binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in chromatin remodeling	IEA Inferred from Electronic Annotation more info
involved_in innate immune response	HEP more info	PubMed

Component	Evidence Code	Pubs
located_in mitochondrial matrix	IEA Inferred from Electronic Annotation more info
located_in mitochondrion	IDA Inferred from Direct Assay more info	PubMed
located_in mitochondrion	IEA Inferred from Electronic Annotation more info
is_active_in nucleus	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: NAD-dependent protein deacylase sir-2.2

NP_001024672.1

Confirmed by transcript evidence

NP_001367072.1

Confirmed by transcript evidence

NP_001367227.1

Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003284.9 Reference assembly

Range

13328270..13331263

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_001381132.3 → NP_001367072.1 NAD-dependent protein deacylase sir-2.2 [Caenorhabditis elegans]

Status: REVIEWED

Conserved Domains (1) summary

cd01409
Location:22 → 286

SIRT4; Eukaryotic and prokaryotic group (class2) which includes human sirtuin SIRT4 and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone ...
NM_001381131.1 → NP_001367227.1 NAD-dependent protein deacylase sir-2.2 [Caenorhabditis elegans]

Status: REVIEWED

Conserved Domains (1) summary

cd01409
Location:27 → 291

SIRT4; Eukaryotic and prokaryotic group (class2) which includes human sirtuin SIRT4 and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone ...
NM_001029501.8 → NP_001024672.1 NAD-dependent protein deacylase sir-2.2 [Caenorhabditis elegans]

See identical proteins and their annotated locations for NP_001024672.1

Status: REVIEWED

UniProtKB/Swiss-Prot

D1MN70, Q20480, Q7JMD3

Conserved Domains (1) summary

cd01409
Location:22 → 284

SIRT4; SIRT4: Eukaryotic and prokaryotic group (class2) which includes human sirtuin SIRT4 and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein ...