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    Results: 1 to 20 of 97

    1.

    Genes2WordCloud: a quick way to identify biological themes from gene lists and free text.

    Baroukh C, Jenkins S, Dannenfelser R, Ma'ayan A.

    Source Code Biol Med. 2011 Oct 13;6:15.

    PMID:
    21995939
    [PubMed]
    Free PMC Article
    3.

    OntologyWidget - a reusable, embeddable widget for easily locating ontology terms.

    Beauheim CC, Wymore F, Nitzberg M, Zachariah ZK, Jin H, Skene JH, Ball CA, Sherlock G.

    BMC Bioinformatics. 2007 Sep 13;8:338.

    PMID:
    17854506
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    4.

    BioVenn - a web application for the comparison and visualization of biological lists using area-proportional Venn diagrams.

    Hulsen T, de Vlieg J, Alkema W.

    BMC Genomics. 2008 Oct 16;9:488.

    PMID:
    18925949
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    5.

    GeneNotes--a novel information management software for biologists.

    Hong P, Wong WH.

    BMC Bioinformatics. 2005 Feb 1;6:20.

    PMID:
    15686593
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    6.

    BioPortal: enhanced functionality via new Web services from the National Center for Biomedical Ontology to access and use ontologies in software applications.

    Whetzel PL, Noy NF, Shah NH, Alexander PR, Nyulas C, Tudorache T, Musen MA.

    Nucleic Acids Res. 2011 Jul;39(Web Server issue):W541-5. Epub 2011 Jun 14.

    PMID:
    21672956
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    7.

    Saint: a lightweight integration environment for model annotation.

    Lister AL, Pocock M, Taschuk M, Wipat A.

    Bioinformatics. 2009 Nov 15;25(22):3026-7. Epub 2009 Sep 4.

    PMID:
    19734151
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    8.

    Data exploration tools for the Gene Ontology database.

    Shoop E, Casaes P, Onsongo G, Lesnett L, Petursdottir EO, Donkor EK, Tkach D, Cosimini M.

    Bioinformatics. 2004 Dec 12;20(18):3442-54. Epub 2004 Jul 22.

    PMID:
    15271779
    [PubMed - indexed for MEDLINE]
    Free Article
    9.

    GarlicESTdb: an online database and mining tool for garlic EST sequences.

    Kim DW, Jung TS, Nam SH, Kwon HR, Kim A, Chae SH, Choi SH, Kim DW, Kim RN, Park HS.

    BMC Plant Biol. 2009 May 18;9:61.

    PMID:
    19445732
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    10.

    Algal Functional Annotation Tool: a web-based analysis suite to functionally interpret large gene lists using integrated annotation and expression data.

    Lopez D, Casero D, Cokus SJ, Merchant SS, Pellegrini M.

    BMC Bioinformatics. 2011 Jul 12;12:282.

    PMID:
    21749710
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    11.

    Cloud BioLinux: pre-configured and on-demand bioinformatics computing for the genomics community.

    Krampis K, Booth T, Chapman B, Tiwari B, Bicak M, Field D, Nelson K.

    BMC Bioinformatics. 2012 Mar 19;13(1):42. [Epub ahead of print]

    PMID:
    22429538
    [PubMed - as supplied by publisher]
    Free Article
    12.

    JUICE: a data management system that facilitates the analysis of large volumes of information in an EST project workflow.

    Latorre M, Silva H, Saba J, Guziolowski C, Vizoso P, Martinez V, Maldonado J, Morales A, Caroca R, Cambiazo V, Campos-Vargas R, Gonzalez M, Orellana A, Retamales J, Meisel LA.

    BMC Bioinformatics. 2006 Nov 23;7:513.

    PMID:
    17123449
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    13.

    The Gaggle: an open-source software system for integrating bioinformatics software and data sources.

    Shannon PT, Reiss DJ, Bonneau R, Baliga NS.

    BMC Bioinformatics. 2006 Mar 28;7:176.

    PMID:
    16569235
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    14.

    Towards Web-based representation and processing of health information.

    Gao S, Mioc D, Yi X, Anton F, Oldfield E, Coleman DJ.

    Int J Health Geogr. 2009 Jan 21;8:3.

    PMID:
    19159445
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    15.

    GSV: a web-based genome synteny viewer for customized data.

    Revanna KV, Chiu CC, Bierschank E, Dong Q.

    BMC Bioinformatics. 2011 Aug 2;12:316.

    PMID:
    21810250
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    16.

    Gobe: an interactive, web-based tool for comparative genomic visualization.

    Pedersen BS, Tang H, Freeling M.

    Bioinformatics. 2011 Apr 1;27(7):1015-6. Epub 2011 Feb 3.

    PMID:
    21296748
    [PubMed - indexed for MEDLINE]
    Free Article
    17.

    BIOSMILE web search: a web application for annotating biomedical entities and relations.

    Dai HJ, Huang CH, Lin RT, Tsai RT, Hsu WL.

    Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W390-8. Epub 2008 May 31.

    PMID:
    18515840
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    18.

    Content-rich biological network constructed by mining PubMed abstracts.

    Chen H, Sharp BM.

    BMC Bioinformatics. 2004 Oct 8;5:147.

    PMID:
    15473905
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    19.

    Bioclipse 2: a scriptable integration platform for the life sciences.

    Spjuth O, Alvarsson J, Berg A, Eklund M, Kuhn S, Mäsak C, Torrance G, Wagener J, Willighagen EL, Steinbeck C, Wikberg JE.

    BMC Bioinformatics. 2009 Dec 3;10:397.

    PMID:
    19958528
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    20.

    LigerCat: using "MeSH Clouds" from journal, article, or gene citations to facilitate the identification of relevant biomedical literature.

    Sarkar IN, Schenk R, Miller H, Norton CN.

    AMIA Annu Symp Proc. 2009 Nov 14;2009:563-7.

    PMID:
    20351918
    [PubMed - indexed for MEDLINE]
    Free PMC Article

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