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    Results: 1 to 20 of 129

    1.

    Targeted high throughput sequencing in clinical cancer settings: formaldehyde fixed-paraffin embedded (FFPE) tumor tissues, input amount and tumor heterogeneity.

    Kerick M, Isau M, Timmermann B, Sültmann H, Herwig R, Krobitsch S, Schaefer G, Verdorfer I, Bartsch G, Klocker H, Lehrach H, Schweiger MR.

    BMC Med Genomics. 2011 Sep 29;4:68.

    PMID:
    21958464
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    2.

    Genome-wide massively parallel sequencing of formaldehyde fixed-paraffin embedded (FFPE) tumor tissues for copy-number- and mutation-analysis.

    Schweiger MR, Kerick M, Timmermann B, Albrecht MW, Borodina T, Parkhomchuk D, Zatloukal K, Lehrach H.

    PLoS One. 2009;4(5):e5548. Epub 2009 May 14.

    PMID:
    19440246
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    3.

    [High-throughput sequencing of frozen and paraffin-embedded tumor and normal tissue].

    Kerick M, Timmermann B, Schweiger MR.

    Pathologe. 2010 Oct;31 Suppl 2:255-7. German.

    PMID:
    20812012
    [PubMed - indexed for MEDLINE]
    4.

    Using next-generation sequencing for high resolution multiplex analysis of copy number variation from nanogram quantities of DNA from formalin-fixed paraffin-embedded specimens.

    Wood HM, Belvedere O, Conway C, Daly C, Chalkley R, Bickerdike M, McKinley C, Egan P, Ross L, Hayward B, Morgan J, Davidson L, MacLennan K, Ong TK, Papagiannopoulos K, Cook I, Adams DJ, Taylor GR, Rabbitts P.

    Nucleic Acids Res. 2010 Aug;38(14):e151. Epub 2010 Jun 4.

    PMID:
    20525786
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    5.

    Formamide as a denaturant for bisulfite conversion of genomic DNA: Bisulfite sequencing of the GSTPi and RARbeta2 genes of 43 formalin-fixed paraffin-embedded prostate cancer specimens.

    Zon G, Barker MA, Kaur P, Groshen S, Jones LW, Imam SA, Boyd VL.

    Anal Biochem. 2009 Sep 15;392(2):117-25. Epub 2009 Jun 6.

    PMID:
    19505431
    [PubMed - indexed for MEDLINE]
    6.

    Final Report on Carcinogens Background Document for Formaldehyde.

    National Toxicology Program.

    Rep Carcinog Backgr Doc. 2010 Jan;(10-5981):i-512.

    PMID:
    20737003
    [PubMed - as supplied by publisher]
    7.

    High-resolution copy number profiling by array CGH using DNA isolated from formalin-fixed, paraffin-embedded tissues.

    van Essen HF, Ylstra B.

    Methods Mol Biol. 2012;838:329-41.

    PMID:
    22228020
    [PubMed - indexed for MEDLINE]
    8.

    Formalin-fixed paraffin-embedded clinical tissues show spurious copy number changes in array-CGH profiles.

    Mc Sherry EA, Mc Goldrick A, Kay EW, Hopkins AM, Gallagher WM, Dervan PA.

    Clin Genet. 2007 Nov;72(5):441-7.

    PMID:
    17935507
    [PubMed - indexed for MEDLINE]
    9.

    Array CGH using whole genome amplification of fresh-frozen and formalin-fixed, paraffin-embedded tumor DNA.

    Little SE, Vuononvirta R, Reis-Filho JS, Natrajan R, Iravani M, Fenwick K, Mackay A, Ashworth A, Pritchard-Jones K, Jones C.

    Genomics. 2006 Feb;87(2):298-306. Epub 2005 Nov 2.

    PMID:
    16271290
    [PubMed - indexed for MEDLINE]
    10.

    Genome-wide copy number alterations detection in fresh frozen and matched FFPE samples using SNP 6.0 arrays.

    Tuefferd M, De Bondt A, Van Den Wyngaert I, Talloen W, Verbeke T, Carvalho B, Clevert DA, Alifano M, Raghavan N, Amaratunga D, Göhlmann H, Broët P, Camilleri-Broët S.

    Genes Chromosomes Cancer. 2008 Nov;47(11):957-64.

    PMID:
    18663747
    [PubMed - indexed for MEDLINE]
    11.

    Copy-number analysis of topoisomerase and thymidylate synthase genes in frozen and FFPE DNAs of colorectal cancers.

    Yu J, Miller R, Zhang W, Sharma M, Holtschlag V, Watson MA, McLeod HL.

    Pharmacogenomics. 2008 Oct;9(10):1459-66.

    PMID:
    18855534
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    12.

    Detection of copy number changes in DNA from formalin fixed paraffin embedded tissues using paralogue ratio tests.

    Saldanha G, Potter L, Dyall L, Bury D, Hathiari N, Ehdode A, Hollox E, Pringle JH.

    Anal Chem. 2011 May 1;83(9):3484-92. Epub 2011 Mar 30.

    PMID:
    21449538
    [PubMed - indexed for MEDLINE]
    13.

    Large fragment Bst DNA polymerase for whole genome amplification of DNA from formalin-fixed paraffin-embedded tissues.

    Aviel-Ronen S, Qi Zhu C, Coe BP, Liu N, Watson SK, Lam WL, Tsao MS.

    BMC Genomics. 2006 Dec 12;7:312.

    PMID:
    17156491
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    14.

    Chromosomal aberrations in bladder cancer: fresh versus formalin fixed paraffin embedded tissue and targeted FISH versus wide microarray-based CGH analysis.

    Panzeri E, Conconi D, Antolini L, Redaelli S, Valsecchi MG, Bovo G, Pallotti F, Viganò P, Strada G, Dalprà L, Bentivegna A.

    PLoS One. 2011;6(9):e24237. Epub 2011 Sep 1.

    PMID:
    21909424
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    15.

    Application of array CGH on archival formalin-fixed paraffin-embedded tissues including small numbers of microdissected cells.

    Johnson NA, Hamoudi RA, Ichimura K, Liu L, Pearson DM, Collins VP, Du MQ.

    Lab Invest. 2006 Sep;86(9):968-78. Epub 2006 Jun 5.

    PMID:
    16751780
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    16.

    Genome-wide, high-resolution detection of copy number, loss of heterozygosity, and genotypes from formalin-fixed, paraffin-embedded tumor tissue using microarrays.

    Jacobs S, Thompson ER, Nannya Y, Yamamoto G, Pillai R, Ogawa S, Bailey DK, Campbell IG.

    Cancer Res. 2007 Mar 15;67(6):2544-51.

    PMID:
    17363572
    [PubMed - indexed for MEDLINE]
    Free Article
    17.

    Whole-genome gene expression profiling of formalin-fixed, paraffin-embedded tissue samples.

    April C, Klotzle B, Royce T, Wickham-Garcia E, Boyaniwsky T, Izzo J, Cox D, Jones W, Rubio R, Holton K, Matulonis U, Quackenbush J, Fan JB.

    PLoS One. 2009 Dec 3;4(12):e8162.

    PMID:
    19997620
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    18.

    Whole genome SNP arrays using DNA derived from formalin-fixed, paraffin-embedded ovarian tumor tissue.

    Thompson ER, Herbert SC, Forrest SM, Campbell IG.

    Hum Mutat. 2005 Oct;26(4):384-9.

    PMID:
    16116623
    [PubMed - indexed for MEDLINE]
    19.

    High-throughput detection of actionable genomic alterations in clinical tumor samples by targeted, massively parallel sequencing.

    Wagle N, Berger MF, Davis MJ, Blumenstiel B, Defelice M, Pochanard P, Ducar M, Van Hummelen P, Macconaill LE, Hahn WC, Meyerson M, Gabriel SB, Garraway LA.

    Cancer Discov. 2012 Jan;2(1):82-93. Epub 2011 Nov 7.

    PMID:
    22585170
    [PubMed - in process]
    20.

    Genome-wide comparison of paired fresh frozen and formalin-fixed paraffin-embedded gliomas by custom BAC and oligonucleotide array comparative genomic hybridization: facilitating analysis of archival gliomas.

    Mohapatra G, Engler DA, Starbuck KD, Kim JC, Bernay DC, Scangas GA, Rousseau A, Batchelor TT, Betensky RA, Louis DN.

    Acta Neuropathol. 2011 Apr;121(4):529-43. Epub 2010 Nov 16.

    PMID:
    21080181
    [PubMed - indexed for MEDLINE]
    Free PMC Article

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