PubMed

Epigenetic histone modifications of human transposable elements: genome defense versus exaptation.

Huda A, Mariño-Ramírez L, Jordan IK.

Mob DNA. 2010 Jan 25;1(1):2.PMID: 20226072 [PubMed - in process]Free PMC ArticleFree textRelated citations

Epigenetic regulation of Mammalian genomes by transposable elements.

Huda A, Jordan IK.

Ann N Y Acad Sci. 2009 Oct;1178:276-84. Review.PMID: 19845643 [PubMed - indexed for MEDLINE]Related citations

Paucity of chimeric gene-transposable element transcripts in the Drosophila melanogaster genome.

Lipatov M, Lenkov K, Petrov DA, Bergman CM.

BMC Biol. 2005 Nov 12;3:24.PMID: 16283942 [PubMed - indexed for MEDLINE]Free PMC ArticleFree textRelated citations

Impact of transposable elements on the organization and function of allopolyploid genomes.

Parisod C, Alix K, Just J, Petit M, Sarilar V, Mhiri C, Ainouche M, Chalhoub B, Grandbastien MA.

New Phytol. 2010 Apr;186(1):37-45. Epub 2009 Dec 7. Review.PMID: 20002321 [PubMed - indexed for MEDLINE]Related citations

Transposable elements donate lineage-specific regulatory sequences to host genomes.

Mariño-Ramírez L, Lewis KC, Landsman D, Jordan IK.

Cytogenet Genome Res. 2005;110(1-4):333-41. Review.PMID: 16093685 [PubMed - indexed for MEDLINE]Free PMC ArticleFree textRelated citations

Transposable elements and an epigenetic basis for punctuated equilibria.

Zeh DW, Zeh JA, Ishida Y.

Bioessays. 2009 Jul;31(7):715-26. Review.PMID: 19472370 [PubMed - indexed for MEDLINE]Related citations

Evolutionary history of mammalian transposons determined by genome-wide defragmentation.

Giordano J, Ge Y, Gelfand Y, Abrusán G, Benson G, Warburton PE.

PLoS Comput Biol. 2007 Jul;3(7):e137.PMID: 17630829 [PubMed - indexed for MEDLINE]Free PMC ArticleFree textRelated citations

Exaptation of protein coding sequences from transposable elements.

Bowen NJ, Jordan IK.

Genome Dyn. 2007;3:147-62. Review.PMID: 18753790 [PubMed - indexed for MEDLINE]Related citations

Rice transposable elements are characterized by various methylation environments in the genome.

Takata M, Kiyohara A, Takasu A, Kishima Y, Ohtsubo H, Sano Y.

BMC Genomics. 2007 Dec 20;8:469.PMID: 18093338 [PubMed - indexed for MEDLINE]Free PMC ArticleFree textRelated citations

Epigenetic silencing of transposable elements: a trade-off between reduced transposition and deleterious effects on neighboring gene expression.

Hollister JD, Gaut BS.

Genome Res. 2009 Aug;19(8):1419-28. Epub 2009 May 28.PMID: 19478138 [PubMed - indexed for MEDLINE]Free PMC ArticleFree textRelated citations

Genome-wide prediction of conserved and nonconserved enhancers by histone acetylation patterns.

Roh TY, Wei G, Farrell CM, Zhao K.

Genome Res. 2007 Jan;17(1):74-81. Epub 2006 Nov 29.PMID: 17135569 [PubMed - indexed for MEDLINE]Free PMC ArticleFree textRelated citations

Evolutionary rates and patterns for human transcription factor binding sites derived from repetitive DNA.

Polavarapu N, Mariño-Ramírez L, Landsman D, McDonald JF, Jordan IK.

BMC Genomics. 2008 May 17;9:226.PMID: 18485226 [PubMed - indexed for MEDLINE]Free PMC ArticleFree textRelated citations

Identification of transposable elements using multiple alignments of related genomes.

Caspi A, Pachter L.

Genome Res. 2006 Feb;16(2):260-70. Epub 2005 Dec 14.PMID: 16354754 [PubMed - indexed for MEDLINE]Free PMC ArticleFree textRelated citations

A genome-wide transcriptional activity survey of rice transposable element-related genes.

Jiao Y, Deng XW.

Genome Biol. 2007;8(2):R28.PMID: 17326825 [PubMed - indexed for MEDLINE]Free PMC ArticleFree textRelated citations

Comparative analysis of transposed element insertion within human and mouse genomes reveals Alu's unique role in shaping the human transcriptome.

Sela N, Mersch B, Gal-Mark N, Lev-Maor G, Hotz-Wagenblatt A, Ast G.

Genome Biol. 2007;8(6):R127.PMID: 17594509 [PubMed - indexed for MEDLINE]Free PMC ArticleFree textRelated citations

Transgene silencing by the host genome defense: implications for the evolution of epigenetic control mechanisms in plants and vertebrates.

Matzke MA, Mette MF, Matzke AJ.

Plant Mol Biol. 2000 Jun;43(2-3):401-15. Review.PMID: 10999419 [PubMed - indexed for MEDLINE]Related citations

Genome-wide nucleosome mapping of Plasmodium falciparum reveals histone-rich coding and histone-poor intergenic regions and chromatin remodeling of core and subtelomeric genes.

Westenberger SJ, Cui L, Dharia N, Winzeler E, Cui L.

BMC Genomics. 2009 Dec 16;10:610.PMID: 20015349 [PubMed - indexed for MEDLINE]Free PMC ArticleFree textRelated citations

Transposable elements in reptilian and avian (sauropsida) genomes.

Kordis D.

Cytogenet Genome Res. 2009;127(2-4):94-111. Epub 2010 Mar 6. Review.PMID: 20215725 [PubMed - indexed for MEDLINE]Related citations

Rapid structural and epigenetic reorganization near transposable elements in hybrid and allopolyploid genomes in Spartina.

Parisod C, Salmon A, Zerjal T, Tenaillon M, Grandbastien MA, Ainouche M.

New Phytol. 2009 Dec;184(4):1003-15. Epub 2009 Sep 23.PMID: 19780987 [PubMed - indexed for MEDLINE]Related citations

Evaluating the protein coding potential of exonized transposable element sequences.

Piriyapongsa J, Rutledge MT, Patel S, Borodovsky M, Jordan IK.

Biol Direct. 2007 Nov 26;2:31.PMID: 18036258 [PubMed - indexed for MEDLINE]Free PMC ArticleFree textRelated citations