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    Results: 1 to 20 of 99

    1.

    Gene ontology analysis for RNA-seq: accounting for selection bias.

    Young MD, Wakefield MJ, Smyth GK, Oshlack A.

    Genome Biol. 2010;11(2):R14. Epub 2010 Feb 4.

    PMID:
    20132535
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    2.

    Length bias correction for RNA-seq data in gene set analyses.

    Gao L, Fang Z, Zhang K, Zhi D, Cui X.

    Bioinformatics. 2011 Mar 1;27(5):662-9. Epub 2011 Jan 19.

    PMID:
    21252076
    [PubMed - indexed for MEDLINE]
    3.

    Uncovering the complexity of transcriptomes with RNA-Seq.

    Costa V, Angelini C, De Feis I, Ciccodicola A.

    J Biomed Biotechnol. 2010;2010:853916. Epub 2010 Jun 27. Review.

    PMID:
    20625424
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    4.

    Molecular alterations in primary prostate cancer after androgen ablation therapy.

    Best CJ, Gillespie JW, Yi Y, Chandramouli GV, Perlmutter MA, Gathright Y, Erickson HS, Georgevich L, Tangrea MA, Duray PH, González S, Velasco A, Linehan WM, Matusik RJ, Price DK, Figg WD, Emmert-Buck MR, Chuaqui RF.

    Clin Cancer Res. 2005 Oct 1;11(19 Pt 1):6823-34.

    PMID:
    16203770
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    5.

    deFuse: an algorithm for gene fusion discovery in tumor RNA-Seq data.

    McPherson A, Hormozdiari F, Zayed A, Giuliany R, Ha G, Sun MG, Griffith M, Heravi Moussavi A, Senz J, Melnyk N, Pacheco M, Marra MA, Hirst M, Nielsen TO, Sahinalp SC, Huntsman D, Shah SP.

    PLoS Comput Biol. 2011 May;7(5):e1001138. Epub 2011 May 19.

    PMID:
    21625565
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    6.

    Final Report on Carcinogens Background Document for Formaldehyde.

    National Toxicology Program.

    Rep Carcinog Backgr Doc. 2010 Jan;(10-5981):i-512.

    PMID:
    20737003
    [PubMed - as supplied by publisher]
    7.

    Comparative effects of DHEA and DHT on gene expression in human LNCaP prostate cancer cells.

    Steele VE, Arnold JT, Lei H, Izmirlian G, Blackman MR.

    Anticancer Res. 2006 Sep-Oct;26(5A):3205-15.

    PMID:
    17094431
    [PubMed - indexed for MEDLINE]
    8.

    Differentially expressed genes in androgen-dependent and -independent prostate carcinomas.

    Chang GT, Blok LJ, Steenbeek M, Veldscholte J, van Weerden WM, van Steenbrugge GJ, Brinkmann AO.

    Cancer Res. 1997 Sep 15;57(18):4075-81.

    PMID:
    9307296
    [PubMed - indexed for MEDLINE]
    Free Article
    9.

    Differentially expressed genes in the prostate cancer cell line LNCaP after exposure to androgen and anti-androgen.

    Coutinho-Camillo CM, Salaorni S, Sarkis AS, Nagai MA.

    Cancer Genet Cytogenet. 2006 Apr 15;166(2):130-8.

    PMID:
    16631469
    [PubMed - indexed for MEDLINE]
    10.

    Comrad: detection of expressed rearrangements by integrated analysis of RNA-Seq and low coverage genome sequence data.

    McPherson A, Wu C, Hajirasouliha I, Hormozdiari F, Hach F, Lapuk A, Volik S, Shah S, Collins C, Sahinalp SC.

    Bioinformatics. 2011 Jun 1;27(11):1481-8. Epub 2011 Apr 9.

    PMID:
    21478487
    [PubMed - indexed for MEDLINE]
    11.

    Analysis of the prostate cancer cell line LNCaP transcriptome using a sequencing-by-synthesis approach.

    Bainbridge MN, Warren RL, Hirst M, Romanuik T, Zeng T, Go A, Delaney A, Griffith M, Hickenbotham M, Magrini V, Mardis ER, Sadar MD, Siddiqui AS, Marra MA, Jones SJ.

    BMC Genomics. 2006 Sep 29;7:246.

    PMID:
    17010196
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    12.

    Factor interaction analysis for chromosome 8 and DNA methylation alterations highlights innate immune response suppression and cytoskeletal changes in prostate cancer.

    Schulz WA, Alexa A, Jung V, Hader C, Hoffmann MJ, Yamanaka M, Fritzsche S, Wlazlinski A, Müller M, Lengauer T, Engers R, Florl AR, Wullich B, Rahnenführer J.

    Mol Cancer. 2007 Feb 5;6:14.

    PMID:
    17280610
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    13.

    Androgens down-regulate myosin light chain kinase in human prostate cancer cells.

    Léveillé N, Fournier A, Labrie C.

    J Steroid Biochem Mol Biol. 2009 Apr;114(3-5):174-9. Epub 2009 Feb 13.

    PMID:
    19429448
    [PubMed - indexed for MEDLINE]
    14.

    GREB1 is a novel androgen-regulated gene required for prostate cancer growth.

    Rae JM, Johnson MD, Cordero KE, Scheys JO, Larios JM, Gottardis MM, Pienta KJ, Lippman ME.

    Prostate. 2006 Jun 1;66(8):886-94.

    PMID:
    16496412
    [PubMed - indexed for MEDLINE]
    15.

    Bias detection and correction in RNA-Sequencing data.

    Zheng W, Chung LM, Zhao H.

    BMC Bioinformatics. 2011 Jul 19;12:290.

    PMID:
    21771300
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    16.

    Endothelin-1 production by prostate cancer cell lines is up-regulated by factors involved in cancer progression and down-regulated by androgens.

    Granchi S, Brocchi S, Bonaccorsi L, Baldi E, Vinci MC, Forti G, Serio M, Maggi M.

    Prostate. 2001 Dec 1;49(4):267-77.

    PMID:
    11746273
    [PubMed - indexed for MEDLINE]
    17.

    A novel transcript from the KLKP1 gene is androgen regulated, down-regulated during prostate cancer progression and encodes the first non-serine protease identified from the human kallikrein gene locus.

    Kaushal A, Myers SA, Dong Y, Lai J, Tan OL, Bui LT, Hunt ML, Digby MR, Samaratunga H, Gardiner RA, Clements JA, Hooper JD.

    Prostate. 2008 Mar 1;68(4):381-99.

    PMID:
    18196551
    [PubMed - indexed for MEDLINE]
    18.

    Novel expressed sequences identified in a model of androgen independent prostate cancer.

    Quayle SN, Hare H, Delaney AD, Hirst M, Hwang D, Schein JE, Jones SJ, Marra MA, Sadar MD.

    BMC Genomics. 2007 Jan 26;8:32.

    PMID:
    17257419
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    19.

    Transcript length bias in RNA-seq data confounds systems biology.

    Oshlack A, Wakefield MJ.

    Biol Direct. 2009 Apr 16;4:14.

    PMID:
    19371405
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    20.

    Deep RNA sequencing analysis of readthrough gene fusions in human prostate adenocarcinoma and reference samples.

    Nacu S, Yuan W, Kan Z, Bhatt D, Rivers CS, Stinson J, Peters BA, Modrusan Z, Jung K, Seshagiri S, Wu TD.

    BMC Med Genomics. 2011 Jan 24;4:11.

    PMID:
    21261984
    [PubMed - indexed for MEDLINE]
    Free PMC Article

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