My NCBISign In
RSS Settings
  • Search:

Display Settings:

Format
Items per page
Sort by

Send to:

Choose Destination

    Results: 1 to 20 of 99

    1.

    FlexSnap: flexible non-sequential protein structure alignment.

    Salem S, Zaki MJ, Bystroff C.

    Algorithms Mol Biol. 2010 Jan 4;5:12.PMID: 20047669 [PubMed]Free PMC ArticleFree textRelated citations

    2.

    Iterative non-sequential protein structural alignment.

    Salem S, Zaki MJ, Bystroff C.

    J Bioinform Comput Biol. 2009 Jun;7(3):571-96.PMID: 19507290 [PubMed - indexed for MEDLINE]Related citations

    3.

    Iterative non-sequential protein structural alignment.

    Salem S, Zaki MJ.

    Comput Syst Bioinformatics Conf. 2008;7:183-94.PMID: 19642279 [PubMed - indexed for MEDLINE]Related citations

    4.

    Flexible structure alignment by chaining aligned fragment pairs allowing twists.

    Ye Y, Godzik A.

    Bioinformatics. 2003 Oct;19 Suppl 2:ii246-55.PMID: 14534198 [PubMed - indexed for MEDLINE]Free ArticleRelated citations

    5.

    Matt: local flexibility aids protein multiple structure alignment.

    Menke M, Berger B, Cowen L.

    PLoS Comput Biol. 2008 Jan;4(1):e10.PMID: 18193941 [PubMed - indexed for MEDLINE]Free PMC ArticleFree textRelated citations

    6.

    Database searching by flexible protein structure alignment.

    Ye Y, Godzik A.

    Protein Sci. 2004 Jul;13(7):1841-50.PMID: 15215527 [PubMed - indexed for MEDLINE]Free PMC ArticleFree textRelated citations

    7.

    FlexProt: alignment of flexible protein structures without a predefinition of hinge regions.

    Shatsky M, Nussinov R, Wolfson HJ.

    J Comput Biol. 2004;11(1):83-106.PMID: 15072690 [PubMed - indexed for MEDLINE]Related citations

    8.

    SANA: an algorithm for sequential and non-sequential protein structure alignment.

    Wang L, Wu LY, Wang Y, Zhang XS, Chen L.

    Amino Acids. 2010 Jul;39(2):417-25. Epub 2010 Feb 2.PMID: 20127263 [PubMed - in process]Related citations

    9.

    TOPS++FATCAT: fast flexible structural alignment using constraints derived from TOPS+ Strings Model.

    Veeramalai M, Ye Y, Godzik A.

    BMC Bioinformatics. 2008 Aug 31;9:358.PMID: 18759993 [PubMed - indexed for MEDLINE]Free PMC ArticleFree textRelated citations

    10.

    Accuracy of structure-based sequence alignment of automatic methods.

    Kim C, Lee B.

    BMC Bioinformatics. 2007 Sep 20;8:355.PMID: 17883866 [PubMed - indexed for MEDLINE]Free PMC ArticleFree textRelated citations

    11.

    Fr-TM-align: a new protein structural alignment method based on fragment alignments and the TM-score.

    Pandit SB, Skolnick J.

    BMC Bioinformatics. 2008 Dec 12;9:531.PMID: 19077267 [PubMed - indexed for MEDLINE]Free PMC ArticleFree textRelated citations

    12.

    Comparative analysis of protein structure alignments.

    Mayr G, Domingues FS, Lackner P.

    BMC Struct Biol. 2007 Jul 26;7:50.PMID: 17672887 [PubMed - indexed for MEDLINE]Free PMC ArticleFree textRelated citations

    13.

    Iterative sequence/secondary structure search for protein homologs: comparison with amino acid sequence alignments and application to fold recognition in genome databases.

    Wallqvist A, Fukunishi Y, Murphy LR, Fadel A, Levy RM.

    Bioinformatics. 2000 Nov;16(11):988-1002.PMID: 11159310 [PubMed - indexed for MEDLINE]Free ArticleRelated citations

    14.

    FATCAT: a web server for flexible structure comparison and structure similarity searching.

    Ye Y, Godzik A.

    Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W582-5.PMID: 15215455 [PubMed - indexed for MEDLINE]Free PMC ArticleFree textRelated citations

    15.

    OPAAS: a web server for optimal, permuted, and other alternative alignments of protein structures.

    Shih ES, Gan RC, Hwang MJ.

    Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W95-8.PMID: 16845117 [PubMed - indexed for MEDLINE]Free PMC ArticleFree textRelated citations

    16.

    Flexible Structural Neighborhood--a database of protein structural similarities and alignments.

    Li Z, Ye Y, Godzik A.

    Nucleic Acids Res. 2006 Jan 1;34(Database issue):D277-80.PMID: 16381864 [PubMed - indexed for MEDLINE]Free PMC ArticleFree textRelated citations

    17.

    Non-sequential structure-based alignments reveal topology-independent core packing arrangements in proteins.

    Yuan X, Bystroff C.

    Bioinformatics. 2005 Apr 1;21(7):1010-9. Epub 2004 Nov 5.PMID: 15531601 [PubMed - indexed for MEDLINE]Free ArticleRelated citations

    18.

    A comprehensive analysis of non-sequential alignments between all protein structures.

    Abyzov A, Ilyin VA.

    BMC Struct Biol. 2007 Nov 16;7:78.PMID: 18005453 [PubMed - indexed for MEDLINE]Free PMC ArticleFree textRelated citations

    19.

    Flexible protein alignment and hinge detection.

    Shatsky M, Nussinov R, Wolfson HJ.

    Proteins. 2002 Aug 1;48(2):242-56.PMID: 12112693 [PubMed - indexed for MEDLINE]Related citations

    20.

    TM-align: a protein structure alignment algorithm based on the TM-score.

    Zhang Y, Skolnick J.

    Nucleic Acids Res. 2005 Apr 22;33(7):2302-9. Print 2005.PMID: 15849316 [PubMed - indexed for MEDLINE]Free PMC ArticleFree textRelated citations

    Display Settings:

    Format
    Items per page
    Sort by

    Send to:

    Choose Destination

    Supplemental Content

    Filter your results:

    Find related data

    Recent activity

    Clear Turn Off Turn On

    Your browsing activity is empty.

    Activity recording is turned off.

    Turn recording back on

    See more...
    You are here: NCBI > Literature > PubMed
    Write to the Help Desk