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    Results: 1 to 20 of 99

    1.

    Efficient algorithms for analyzing segmental duplications with deletions and inversions in genomes.

    Kahn CL, Mozes S, Raphael BJ.

    Algorithms Mol Biol. 2010 Jan 4;5(1):11. [Epub ahead of print]PMID: 20047668 [PubMed - as supplied by publisher]Free PMC ArticleFree textRelated citations

    2.

    Analysis of segmental duplications via duplication distance.

    Kahn CL, Raphael BJ.

    Bioinformatics. 2008 Aug 15;24(16):i133-8.PMID: 18689814 [PubMed - indexed for MEDLINE]Free ArticleRelated citations

    3.

    A parsimony approach to analysis of human segmental duplications.

    Kahn CL, Raphael BJ.

    Pac Symp Biocomput. 2009:126-37.PMID: 19213134 [PubMed - indexed for MEDLINE]Free ArticleRelated citations

    4.

    Genome rearrangements with duplications.

    Bader M.

    BMC Bioinformatics. 2010 Jan 18;11 Suppl 1:S27.PMID: 20122199 [PubMed - indexed for MEDLINE]Free ArticleRelated citations

    5.

    Sorting by reversals, block interchanges, tandem duplications, and deletions.

    Bader M.

    BMC Bioinformatics. 2009 Jan 30;10 Suppl 1:S9.PMID: 19208182 [PubMed - indexed for MEDLINE]Free PMC ArticleFree textRelated citations

    6.

    Evolutionary mechanisms shaping the genomic structure of the Williams-Beuren syndrome chromosomal region at human 7q11.23.

    Antonell A, de Luis O, Domingo-Roura X, Pérez-Jurado LA.

    Genome Res. 2005 Sep;15(9):1179-88.PMID: 16140988 [PubMed - indexed for MEDLINE]Free PMC ArticleFree textRelated citations

    7.

    Analysis of recent segmental duplications in the bovine genome.

    Liu GE, Ventura M, Cellamare A, Chen L, Cheng Z, Zhu B, Li C, Song J, Eichler EE.

    BMC Genomics. 2009 Dec 1;10:571.PMID: 19951423 [PubMed - indexed for MEDLINE]Free PMC ArticleFree textRelated citations

    8.

    Segmental duplications and copy-number variation in the human genome.

    Sharp AJ, Locke DP, McGrath SD, Cheng Z, Bailey JA, Vallente RU, Pertz LM, Clark RA, Schwartz S, Segraves R, Oseroff VV, Albertson DG, Pinkel D, Eichler EE.

    Am J Hum Genet. 2005 Jul;77(1):78-88. Epub 2005 May 25.PMID: 15918152 [PubMed - indexed for MEDLINE]Free PMC ArticleFree textRelated citations

    9.

    Quantifying the mechanisms for segmental duplications in mammalian genomes by statistical analysis and modeling.

    Zhou Y, Mishra B.

    Proc Natl Acad Sci U S A. 2005 Mar 15;102(11):4051-6. Epub 2005 Mar 1.PMID: 15741274 [PubMed - indexed for MEDLINE]Free PMC ArticleFree textRelated citations

    10.

    Segmental duplications: organization and impact within the current human genome project assembly.

    Bailey JA, Yavor AM, Massa HF, Trask BJ, Eichler EE.

    Genome Res. 2001 Jun;11(6):1005-17.PMID: 11381028 [PubMed - indexed for MEDLINE]Free PMC ArticleFree textRelated citations

    11.

    Asymmetric histone modifications between the original and derived loci of human segmental duplications.

    Zheng D.

    Genome Biol. 2008;9(7):R105. Epub 2008 Jul 3.PMID: 18598352 [PubMed - indexed for MEDLINE]Free PMC ArticleFree textRelated citations

    12.

    Segmental duplication density decrease with distance to human-mouse breaks of synteny.

    Sainz J, Rovensky P, Gudjonsson SA, Thorleifsson G, Stefansson K, Gulcher JR.

    Eur J Hum Genet. 2006 Feb;14(2):216-21.PMID: 16306878 [PubMed - indexed for MEDLINE]Free ArticleRelated citations

    13.

    HomologMiner: looking for homologous genomic groups in whole genomes.

    Hou M, Berman P, Hsu CH, Harris RS.

    Bioinformatics. 2007 Apr 15;23(8):917-25. Epub 2007 Feb 18.PMID: 17308341 [PubMed - indexed for MEDLINE]Free ArticleRelated citations

    14.

    Diverged copies of the seed regulatory Opaque-2 gene by a segmental duplication in the progenitor genome of rice, sorghum, and maize.

    Xu JH, Messing J.

    Mol Plant. 2008 Sep;1(5):760-9. Epub 2008 Aug 1.PMID: 19825579 [PubMed - indexed for MEDLINE]Related citations

    15.

    Enrichment of segmental duplications in regions of breaks of synteny between the human and mouse genomes suggest their involvement in evolutionary rearrangements.

    Armengol L, Pujana MA, Cheung J, Scherer SW, Estivill X.

    Hum Mol Genet. 2003 Sep 1;12(17):2201-8. Epub 2003 Jul 8.PMID: 12915466 [PubMed - indexed for MEDLINE]Free ArticleRelated citations

    16.

    Phylogenomic approaches to common problems encountered in the analysis of low copy repeats: the sulfotransferase 1A gene family example.

    Bradley ME, Benner SA.

    BMC Evol Biol. 2005 Mar 7;5(1):22.PMID: 15752422 [PubMed - indexed for MEDLINE]Free PMC ArticleFree textRelated citations

    17.

    Divergent origins and concerted expansion of two segmental duplications on chromosome 16.

    Eichler EE, Johnson ME, Alkan C, Tuzun E, Sahinalp C, Misceo D, Archidiacono N, Rocchi M.

    J Hered. 2001 Nov-Dec;92(6):462-8.PMID: 11948212 [PubMed - indexed for MEDLINE]Free ArticleRelated citations

    18.

    A genome-wide survey of segmental duplications that mediate common human genetic variation of chromosomal architecture.

    Mehan MR, Freimer NB, Ophoff RA.

    Hum Genomics. 2004 Aug;1(5):335-44.PMID: 15588494 [PubMed - indexed for MEDLINE]Related citations

    19.

    Comparative genomics of ParaHox clusters of teleost fishes: gene cluster breakup and the retention of gene sets following whole genome duplications.

    Siegel N, Hoegg S, Salzburger W, Braasch I, Meyer A.

    BMC Genomics. 2007 Sep 6;8:312.PMID: 17822543 [PubMed - indexed for MEDLINE]Free PMC ArticleFree textRelated citations

    20.

    Serial segmental duplications during primate evolution result in complex human genome architecture.

    Stankiewicz P, Shaw CJ, Withers M, Inoue K, Lupski JR.

    Genome Res. 2004 Nov;14(11):2209-20.PMID: 15520286 [PubMed - indexed for MEDLINE]Free PMC ArticleFree textRelated citations

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