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A markov classification model for metabolic pathways.

Hancock T, Mamitsuka H.

Algorithms Mol Biol. 2010 Jan 4;5:10.PMID: 20047667 [PubMed]Free PMC ArticleFree textRelated citations

Active pathway identification and classification with probabilistic ensembles.

Hancock T, Mamitsuka H.

Genome Inform. 2010 Jan;22:30-40.PMID: 20238417 [PubMed - indexed for MEDLINE]Free ArticleRelated citations

A hierarchical mixture of Markov models for finding biologically active metabolic paths using gene expression and protein classes.

Mamitsuka H, Okuno Y.

Proc IEEE Comput Syst Bioinform Conf. 2004:341-52.PMID: 16448027 [PubMed - indexed for MEDLINE]Related citations

Mining metabolic pathways through gene expression.

Hancock T, Takigawa I, Mamitsuka H.

Bioinformatics. 2010 Jun 29. [Epub ahead of print]PMID: 20587705 [PubMed - as supplied by publisher]Free ArticleRelated citations

Quantitative inference of dynamic regulatory pathways via microarray data.

Chang WC, Li CW, Chen BS.

BMC Bioinformatics. 2005 Mar 7;6:44.PMID: 15748298 [PubMed - indexed for MEDLINE]Free PMC ArticleFree textRelated citations

Mixture classification model based on clinical markers for breast cancer prognosis.

Zeng T, Liu J.

Artif Intell Med. 2010 Feb-Mar;48(2-3):129-37. Epub 2009 Dec 14.PMID: 20005686 [PubMed - indexed for MEDLINE]Related citations

Support Vector Machines with Disease-gene-centric Network Penalty for High Dimensional Microarray Data.

Zhu Y, Pan W, Shen X.

Stat Interface. 2009 Summer;2(3):257-269.PMID: 20401316 [PubMed]Free PMC ArticleFree textRelated citations

Extension of mixture-of-experts networks for binary classification of hierarchical data.

Ng SK, McLachlan GJ.

Artif Intell Med. 2007 Sep;41(1):57-67. Epub 2007 Jul 16.PMID: 17629686 [PubMed - indexed for MEDLINE]Related citations

Incorporation of enzyme concentrations into FBA and identification of optimal metabolic pathways.

De RK, Das M, Mukhopadhyay S.

BMC Syst Biol. 2008 Jul 18;2:65.PMID: 18634554 [PubMed - indexed for MEDLINE]Free PMC ArticleFree textRelated citations

Inference of gene pathways using mixture Bayesian networks.

Ko Y, Zhai C, Rodriguez-Zas S.

BMC Syst Biol. 2009 May 19;3:54.PMID: 19454027 [PubMed - indexed for MEDLINE]Free PMC ArticleFree textRelated citations

The metabolic response of heterotrophic Arabidopsis cells to oxidative stress.

Baxter CJ, Redestig H, Schauer N, Repsilber D, Patil KR, Nielsen J, Selbig J, Liu J, Fernie AR, Sweetlove LJ.

Plant Physiol. 2007 Jan;143(1):312-25. Epub 2006 Nov 22.PMID: 17122072 [PubMed - indexed for MEDLINE]Free PMC ArticleFree textRelated citations

Identifying drug active pathways from gene networks estimated by gene expression data.

Tamada Y, Imoto S, Tashiro K, Kuhara S, Miyano S.

Genome Inform. 2005;16(1):182-91.PMID: 16362921 [PubMed - indexed for MEDLINE]Related citations

Support vector machines committee classification method for computer-aided polyp detection in CT colonography.

Jerebko AK, Malley JD, Franaszek M, Summers RM.

Acad Radiol. 2005 Apr;12(4):479-86.PMID: 15831422 [PubMed - indexed for MEDLINE]Related citations

Multiclass cancer classification using gene expression profiling and probabilistic neural networks.

Berrar DP, Downes CS, Dubitzky W.

Pac Symp Biocomput. 2003:5-16.PMID: 12603013 [PubMed - indexed for MEDLINE]Free ArticleRelated citations

Comparison of feature selection and classification for MALDI-MS data.

Liu Q, Sung AH, Qiao M, Chen Z, Yang JY, Yang MQ, Huang X, Deng Y.

BMC Genomics. 2009 Jul 7;10 Suppl 1:S3.PMID: 19594880 [PubMed - indexed for MEDLINE]Free PMC ArticleFree textRelated citations

Inferring branching pathways in genome-scale metabolic networks.

Pitkänen E, Jouhten P, Rousu J.

BMC Syst Biol. 2009 Oct 29;3:103.PMID: 19874610 [PubMed - indexed for MEDLINE]Free PMC ArticleFree textRelated citations

A Markov random field model for network-based analysis of genomic data.

Wei Z, Li H.

Bioinformatics. 2007 Jun 15;23(12):1537-44. Epub 2007 May 5.PMID: 17483504 [PubMed - indexed for MEDLINE]Free ArticleRelated citations

Network-based support vector machine for classification of microarray samples.

Zhu Y, Shen X, Pan W.

BMC Bioinformatics. 2009 Jan 30;10 Suppl 1:S21.PMID: 19208121 [PubMed - indexed for MEDLINE]Free PMC ArticleFree textRelated citations

Improved microarray-based decision support with graph encoded interactome data.

Daemen A, Signoretto M, Gevaert O, Suykens JA, De Moor B.

PLoS One. 2010 Apr 19;5(4):e10225.PMID: 20419106 [PubMed - in process]Free PMC ArticleFree textRelated citations

Putative cold acclimation pathways in Arabidopsis thaliana identified by a combined analysis of mRNA co-expression patterns, promoter motifs and transcription factors.

Chawade A, Bräutigam M, Lindlöf A, Olsson O, Olsson B.

BMC Genomics. 2007 Sep 2;8:304.PMID: 17764576 [PubMed - indexed for MEDLINE]Free PMC ArticleFree textRelated citations