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An asymmetric approach to preserve common intervals while sorting by reversals.

Braga MD, Gautier C, Sagot MF.

Algorithms Mol Biol. 2009 Dec 30;4:16.PMID: 20042101 [PubMed]Free PMC ArticleFree textRelated citations

baobabLUNA: the solution space of sorting by reversals.

Braga MD.

Bioinformatics. 2009 Jul 15;25(14):1833-5. Epub 2009 Apr 28.PMID: 19401401 [PubMed - indexed for MEDLINE]Free PMC ArticleFree textRelated citations

Exploring the solution space of sorting by reversals, with experiments and an application to evolution.

Braga MD, Sagot MF, Scornavacca C, Tannier E.

IEEE/ACM Trans Comput Biol Bioinform. 2008 Jul-Sep;5(3):348-56.PMID: 18670039 [PubMed - indexed for MEDLINE]Related citations

Perfect sorting by reversals is not always difficult.

Bérard S, Bergeron A, Chauve C, Paul C.

IEEE/ACM Trans Comput Biol Bioinform. 2007 Jan-Mar;4(1):4-16.PMID: 17277409 [PubMed - indexed for MEDLINE]Related citations

Algorithms for computing parsimonious evolutionary scenarios for genome evolution, the last universal common ancestor and dominance of horizontal gene transfer in the evolution of prokaryotes.

Mirkin BG, Fenner TI, Galperin MY, Koonin EV.

BMC Evol Biol. 2003 Jan 6;3:2. Epub 2003 Jan 6.PMID: 12515582 [PubMed - indexed for MEDLINE]Free PMC ArticleFree textRelated citations

Sorting by reversals, block interchanges, tandem duplications, and deletions.

Bader M.

BMC Bioinformatics. 2009 Jan 30;10 Suppl 1:S9.PMID: 19208182 [PubMed - indexed for MEDLINE]Free PMC ArticleFree textRelated citations

An algorithm to enumerate sorting reversals for signed permutations.

Siepel AC.

J Comput Biol. 2003;10(3-4):575-97.PMID: 12935346 [PubMed - indexed for MEDLINE]Related citations

Genome rearrangements with duplications.

Bader M.

BMC Bioinformatics. 2010 Jan 18;11 Suppl 1:S27.PMID: 20122199 [PubMed - indexed for MEDLINE]Free ArticleRelated citations

Computation of perfect DCJ rearrangement scenarios with linear and circular chromosomes.

Bérard S, Chateau A, Chauve C, Paul C, Tannier E.

J Comput Biol. 2009 Oct;16(10):1287-309.PMID: 19803733 [PubMed - indexed for MEDLINE]Related citations

Evolution under reversals: parsimony and conservation of common intervals.

Diekmann Y, Sagot MF, Tannier E.

IEEE/ACM Trans Comput Biol Bioinform. 2007 Apr-Jun;4(2):301-9.PMID: 17473322 [PubMed - indexed for MEDLINE]Related citations

Two notes on genome rearrangement.

Ozery-Flato M, Shamir R.

J Bioinform Comput Biol. 2003 Apr;1(1):71-94.PMID: 15290782 [PubMed - indexed for MEDLINE]Related citations

Efficient sampling of parsimonious inversion histories with application to genome rearrangement in Yersinia.

Miklós I, Darling AE.

Genome Biol Evol. 2009 Jun 22;1:153-64.PMID: 20333186 [PubMed]Free PMC ArticleFree textRelated citations

Genome rearrangement based on reversals that preserve conserved intervals.

Bernt M, Merkle D, Middendorf M.

IEEE/ACM Trans Comput Biol Bioinform. 2006 Jul-Sep;3(3):275-88.PMID: 17048465 [PubMed - indexed for MEDLINE]Related citations

Sorting by reversals and block-interchanges with various weight assignments.

Lin YC, Lin CY, Lin CR.

BMC Bioinformatics. 2009 Dec 4;10:398.PMID: 19958558 [PubMed - indexed for MEDLINE]Free PMC ArticleFree textRelated citations

Homoplasy in genome-wide analysis of rare amino acid replacements: the molecular-evolutionary basis for Vavilov's law of homologous series.

Rogozin IB, Thomson K, Csürös M, Carmel L, Koonin EV.

Biol Direct. 2008 Mar 17;3:7.PMID: 18346278 [PubMed - indexed for MEDLINE]Free PMC ArticleFree textRelated citations

Analysis of circular genome rearrangement by fusions, fissions and block-interchanges.

Lu CL, Huang YL, Wang TC, Chiu HT.

BMC Bioinformatics. 2006 Jun 12;7:295.PMID: 16768797 [PubMed - indexed for MEDLINE]Free PMC ArticleFree textRelated citations

[Development of antituberculous drugs: current status and future prospects]

Tomioka H, Namba K.

Kekkaku. 2006 Dec;81(12):753-74. Review. Japanese. PMID: 17240921 [PubMed - indexed for MEDLINE]Related citations

Clusters of orthologous genes for 41 archaeal genomes and implications for evolutionary genomics of archaea.

Makarova KS, Sorokin AV, Novichkov PS, Wolf YI, Koonin EV.

Biol Direct. 2007 Nov 27;2:33.PMID: 18042280 [PubMed - indexed for MEDLINE]Free PMC ArticleFree textRelated citations

Phylogenetic analysis of nucleotide sequences: an algebraic approach.

Schmidt W.

Math Biosci. 1998 Dec 1;154(1):39-55.PMID: 9990807 [PubMed - indexed for MEDLINE]Related citations

[Analysis, identification and correction of some errors of model refseqs appeared in NCBI Human Gene Database by in silico cloning and experimental verification of novel human genes]

Zhang DL, Ji L, Li YD.

Yi Chuan Xue Bao. 2004 May;31(5):431-43. Chinese. PMID: 15478601 [PubMed - indexed for MEDLINE]Related citations