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Results: 1 to 20 of 100

1.

Inverse tuning of metal binding affinity and protein stability by altering charged coordination residues in designed calcium binding proteins.

Maniccia AW, Yang W, Johnson JA, Li S, Tjong H, Zhou HX, Shaket LA, Yang JJ.

PMC Biophys. 2009 Dec 21;2:11.PMID: 20025729 [PubMed]Related articlesFree article

2.

Using protein design to dissect the effect of charged residues on metal binding and protein stability.

Maniccia AW, Yang W, Li SY, Johnson JA, Yang JJ.

Biochemistry. 2006 May 9;45(18):5848-56.PMID: 16669627 [PubMed - indexed for MEDLINE]Related articles

3.

Design of a calcium-binding protein with desired structure in a cell adhesion molecule.

Yang W, Wilkins AL, Ye Y, Liu ZR, Li SY, Urbauer JL, Hellinga HW, Kearney A, van der Merwe PA, Yang JJ.

J Am Chem Soc. 2005 Feb 23;127(7):2085-93.PMID: 15713084 [PubMed - indexed for MEDLINE]Related articles

4.

Remarkable affinity and selectivity for Cs+ and uranyl (UO22+) binding to the manganese site of the apo-water oxidation complex of photosystem II.

Ananyev GM, Murphy A, Abe Y, Dismukes GC.

Biochemistry. 1999 Jun 1;38(22):7200-9.PMID: 10353831 [PubMed - indexed for MEDLINE]Related articles

5.

Rational design of a calcium-binding protein.

Yang W, Jones LM, Isley L, Ye Y, Lee HW, Wilkins A, Liu ZR, Hellinga HW, Malchow R, Ghazi M, Yang JJ.

J Am Chem Soc. 2003 May 21;125(20):6165-71.PMID: 12785848 [PubMed - indexed for MEDLINE]Related articles

6.

Tuning the equilibrium ion affinity and selectivity of the EF-hand calcium binding motif: substitutions at the gateway position.

Drake SK, Lee KL, Falke JJ.

Biochemistry. 1996 May 28;35(21):6697-705.PMID: 8639620 [PubMed - indexed for MEDLINE]Related articles

7.

Effects of genetic replacements of charged and H-bonding residues in the retinal pocket on Ca2+ binding to deionized bacteriorhodopsin.

Zhang YN, el-Sayed MA, Bonet ML, Lanyi JK, Chang M, Ni B, Needleman R.

Proc Natl Acad Sci U S A. 1993 Feb 15;90(4):1445-9.PMID: 8434004 [PubMed - indexed for MEDLINE]Related articlesFree article

8.

Metal-binding studies for a de novo designed calcium-binding protein.

Wilkins AL, Ye Y, Yang W, Lee HW, Liu ZR, Yang JJ.

Protein Eng. 2002 Jul;15(7):571-4.PMID: 12200539 [PubMed - indexed for MEDLINE]Related articlesFree article

9.

A DFT/CDM Study of metal-carboxylate interactions in metalloproteins: factors governing the maximum number of metal-bound carboxylates.

Dudev T, Lim C.

J Am Chem Soc. 2006 Feb 8;128(5):1553-61.PMID: 16448126 [PubMed - indexed for MEDLINE]Related articles

10.

Secondary ligands enhance affinity at a designed metal-binding site.

Marino SF, Regan L.

Chem Biol. 1999 Sep;6(9):649-55.PMID: 10467132 [PubMed - indexed for MEDLINE]Related articles

11.

Calcium(II) site specificity: effect of size and charge on metal ion binding to an EF-hand-like site.

Snyder EE, Buoscio BW, Falke JJ.

Biochemistry. 1990 Apr 24;29(16):3937-43.PMID: 2162201 [PubMed - indexed for MEDLINE]Related articles

12.

Potential influence of Asp in the Ca2+ coordination position 5 of parvalbumin on the calcium-binding affinity: a computational study.

Zhao J, Nelson DJ, Huo S.

J Inorg Biochem. 2006 Nov;100(11):1879-87. Epub 2006 Aug 5.PMID: 16965819 [PubMed - indexed for MEDLINE]Related articles

13.

Femtomolar Zn(II) affinity in a peptide-based ligand designed to model thiolate-rich metalloprotein active sites.

Petros AK, Reddi AR, Kennedy ML, Hyslop AG, Gibney BR.

Inorg Chem. 2006 Dec 11;45(25):9941-58.PMID: 17140191 [PubMed - indexed for MEDLINE]Related articlesFree article

14.

Kinetic tuning of the EF-hand calcium binding motif: the gateway residue independently adjusts (i) barrier height and (ii) equilibrium.

Drake SK, Falke JJ.

Biochemistry. 1996 Feb 13;35(6):1753-60.PMID: 8639655 [PubMed - indexed for MEDLINE]Related articles

15.

The C-terminal residues in the alpha-interacting domain (AID) helix anchor CaV beta subunit interaction and modulation of CaV2.3 channels.

Berrou L, Dodier Y, Raybaud A, Tousignant A, Dafi O, Pelletier JN, Parent L.

J Biol Chem. 2005 Jan 7;280(1):494-505. Epub 2004 Oct 26.PMID: 15507442 [PubMed - indexed for MEDLINE]Related articlesFree article

16.

Metalloprotein and metallo-DNA/RNAzyme design: current approaches, success measures, and future challenges.

Lu Y.

Inorg Chem. 2006 Dec 11;45(25):9930-40.PMID: 17140190 [PubMed - indexed for MEDLINE]Related articlesFree article

17.

Metals in proteins: correlation between the metal-ion type, coordination number and the amino-acid residues involved in the coordination.

Dokmanić I, Sikić M, Tomić S.

Acta Crystallogr D Biol Crystallogr. 2008 Mar;64(Pt 3):257-63. Epub 2008 Feb 20.PMID: 18323620 [PubMed - indexed for MEDLINE]Related articles

18.

The effects of Ca2+ binding on the dynamic properties of a designed Ca2+-binding protein.

Yang W, Wilkins AL, Li S, Ye Y, Yang JJ.

Biochemistry. 2005 Jun 14;44(23):8267-73.PMID: 15938616 [PubMed - indexed for MEDLINE]Related articles

19.

Oncomodulin. 1H NMR and optical stopped-flow spectroscopic studies of its solution conformation and metal-binding properties.

Williams TC, Corson DC, Sykes BD, MacManus JP.

J Biol Chem. 1987 May 5;262(13):6248-56.PMID: 3571255 [PubMed - indexed for MEDLINE]Related articlesFree article

20.

First-second shell interactions in metal binding sites in proteins: a PDB survey and DFT/CDM calculations.

Dudev T, Lin YL, Dudev M, Lim C.

J Am Chem Soc. 2003 Mar 12;125(10):3168-80.PMID: 12617685 [PubMed - indexed for MEDLINE]Related articles

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