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Value of eight-amino-acid matches in predicting the allergenicity status of proteins: an empirical bioinformatic investigation.

Herman RA, Song P, Thirumalaiswamysekhar A.

Clin Mol Allergy. 2009 Oct 29;7:9.PMID: 19874602 [PubMed - in process]Related articlesFree article

The value of short amino acid sequence matches for prediction of protein allergenicity.

Silvanovich A, Nemeth MA, Song P, Herman R, Tagliani L, Bannon GA.

Toxicol Sci. 2006 Mar;90(1):252-8. Epub 2005 Dec 7.PMID: 16338955 [PubMed - indexed for MEDLINE]Related articlesFree article

Bioinformatic methods for allergenicity assessment using a comprehensive allergen database.

Hileman RE, Silvanovich A, Goodman RE, Rice EA, Holleschak G, Astwood JD, Hefle SL.

Int Arch Allergy Immunol. 2002 Aug;128(4):280-91.PMID: 12218366 [PubMed - indexed for MEDLINE]Related articles

Practical and predictive bioinformatics methods for the identification of potentially cross-reactive protein matches.

Goodman RE.

Mol Nutr Food Res. 2006 Jul;50(7):655-60. Review.PMID: 16810734 [PubMed - indexed for MEDLINE]Related articles

Further evaluation of the utility of "sliding window" FASTA in predicting cross-reactivity with allergenic proteins.

Cressman RF, Ladics G.

Regul Toxicol Pharmacol. 2009 Aug;54(3 Suppl):S20-5. Epub 2008 Dec 11.PMID: 19114081 [PubMed - indexed for MEDLINE]Related articles

Assessment of the potential allergenicity of a Milk Basic Protein fraction.

Goodman RE, Taylor SL, Yamamura J, Kobayashi T, Kawakami H, Kruger CL, Thompson GP.

Food Chem Toxicol. 2007 Oct;45(10):1787-94. Epub 2007 Mar 28.PMID: 17482742 [PubMed - indexed for MEDLINE]Related articles

Performing IgE serum testing due to bioinformatics matches in the allergenicity assessment of GM crops.

Goodman RE.

Food Chem Toxicol. 2008 Oct;46 Suppl 10:S24-34. Epub 2008 Jul 31.PMID: 18715545 [PubMed - indexed for MEDLINE]Related articles

AllerTool: a web server for predicting allergenicity and allergic cross-reactivity in proteins.

Zhang ZH, Koh JL, Zhang GL, Choo KH, Tammi MT, Tong JC.

Bioinformatics. 2007 Feb 15;23(4):504-6. Epub 2006 Dec 6.PMID: 17150996 [PubMed - indexed for MEDLINE]Related articlesFree article

Current codex guidelines for assessment of potential protein allergenicity.

Ladics GS.

Food Chem Toxicol. 2008 Oct;46 Suppl 10:S20-3. Epub 2008 Jul 30.PMID: 18708115 [PubMed - indexed for MEDLINE]Related articles

Prediction of food protein allergenicity: a bioinformatic learning systems approach.

Zorzet A, Gustafsson M, Hammerling U.

In Silico Biol. 2002;2(4):525-34.PMID: 12611632 [PubMed - indexed for MEDLINE]Related articlesFree article

[Development of Allergen Database for Food Safety (ADFS): an integrated database to search allergens and predict allergenicity]

Nakamura R, Teshima R, Takagi K, Sawada J.

Kokuritsu Iyakuhin Shokuhin Eisei Kenkyusho Hokoku. 2005;(123):32-6. Japanese. PMID: 16541749 [PubMed - indexed for MEDLINE]Related articles

Identifying food proteins with allergenic potential: evolution of approaches to safety assessment and research to provide additional tools.

Ladics GS, Selgrade MK.

Regul Toxicol Pharmacol. 2009 Aug;54(3 Suppl):S2-6. Epub 2008 Nov 8. Review.PMID: 19028539 [PubMed - indexed for MEDLINE]Related articles

Comparison of conventional FASTA identity searches with the 80 amino acid sliding window FASTA search for the elucidation of potential identities to known allergens.

Ladics GS, Bannon GA, Silvanovich A, Cressman RF.

Mol Nutr Food Res. 2007 Aug;51(8):985-98.PMID: 17639511 [PubMed - indexed for MEDLINE]Related articles

Sequence analysis for assessing potential allergenicity.

Gendel SM.

Ann N Y Acad Sci. 2002 May;964:87-98. Review.PMID: 12023196 [PubMed - indexed for MEDLINE]Related articles

AllerHunter: a SVM-pairwise system for assessment of allergenicity and allergic cross-reactivity in proteins.

Muh HC, Tong JC, Tammi MT.

PLoS One. 2009 Jun 10;4(6):e5861.PMID: 19516900 [PubMed - indexed for MEDLINE]Related articlesFree article

Prediction of protein allergenicity using local description of amino acid sequence.

Tong JC, Tammi MT.

Front Biosci. 2008 May 1;13:6072-8.PMID: 18508644 [PubMed - indexed for MEDLINE]Related articles

In silico predictability of allergenicity: from amino acid sequence via 3-D structure to allergenicity.

Aalberse RC, Stadler BM.

Mol Nutr Food Res. 2006 Jul;50(7):625-7. Review.PMID: 16764015 [PubMed - indexed for MEDLINE]Related articles

Evaluation of the potential allergenicity of the enzyme microbial transglutaminase using the 2001 FAO/WHO Decision Tree.

Pedersen MH, Hansen TK, Sten E, Seguro K, Ohtsuka T, Morita A, Bindslev-Jensen C, Poulsen LK.

Mol Nutr Food Res. 2004 Nov;48(6):434-40.PMID: 15508178 [PubMed - indexed for MEDLINE]Related articles

ALLERDB database and integrated bioinformatic tools for assessment of allergenicity and allergic cross-reactivity.

Zhang ZH, Tan SC, Koh JL, Falus A, Brusic V.

Cell Immunol. 2006 Dec;244(2):90-6. Epub 2007 Apr 30.PMID: 17467675 [PubMed - indexed for MEDLINE]Related articles

Presence of potential allergy-related linear epitopes in novel proteins from conventional crops and the implication for the safety assessment of these crops with respect to the current testing of genetically modified crops.

Kleter GA, Peijnenburg AA.

Plant Biotechnol J. 2003 Sep;1(5):371-80.PMID: 17166136 [PubMed]Related articles