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TEs or not TEs? That is the evolutionary question.

Vaknin K, Goren A, Ast G.

J Biol. 2009 Oct 23;8(9):83.PMID: 19863763 [PubMed - in process]Related articlesFree article

Transposable elements donate lineage-specific regulatory sequences to host genomes.

Mariño-Ramírez L, Lewis KC, Landsman D, Jordan IK.

Cytogenet Genome Res. 2005;110(1-4):333-41. Review.PMID: 16093685 [PubMed - indexed for MEDLINE]Related articlesFree article

Paucity of chimeric gene-transposable element transcripts in the Drosophila melanogaster genome.

Lipatov M, Lenkov K, Petrov DA, Bergman CM.

BMC Biol. 2005 Nov 12;3:24.PMID: 16283942 [PubMed - indexed for MEDLINE]Related articlesFree article

The effect of transposable element insertions on gene expression evolution in rodents.

Pereira V, Enard D, Eyre-Walker A.

PLoS One. 2009;4(2):e4321. Epub 2009 Feb 2.PMID: 19183808 [PubMed - indexed for MEDLINE]Related articlesFree article

Birth and death of genes promoted by transposable elements in Oryza sativa.

Sakai H, Tanaka T, Itoh T.

Gene. 2007 May 1;392(1-2):59-63. Epub 2006 Nov 23.PMID: 17210233 [PubMed - indexed for MEDLINE]Related articles

Genome organization and gene expression shape the transposable element distribution in the Drosophila melanogaster euchromatin.

Fontanillas P, Hartl DL, Reuter M.

PLoS Genet. 2007 Nov;3(11):e210. Epub 2007 Oct 10.PMID: 18081425 [PubMed - indexed for MEDLINE]Related articlesFree article

Evolutionary history of mammalian transposons determined by genome-wide defragmentation.

Giordano J, Ge Y, Gelfand Y, Abrusán G, Benson G, Warburton PE.

PLoS Comput Biol. 2007 Jul;3(7):e137.PMID: 17630829 [PubMed - indexed for MEDLINE]Related articlesFree article

Transposable elements and the evolution of gene expression.

Wessler SR.

Symp Soc Exp Biol. 1998;51:115-22. Review.PMID: 10645433 [PubMed - indexed for MEDLINE]Related articles

High rate of recent transposable element-induced adaptation in Drosophila melanogaster.

González J, Lenkov K, Lipatov M, Macpherson JM, Petrov DA.

PLoS Biol. 2008 Oct 21;6(10):e251.PMID: 18942889 [PubMed - indexed for MEDLINE]Related articlesFree article

Epigenetic silencing of transposable elements: a trade-off between reduced transposition and deleterious effects on neighboring gene expression.

Hollister JD, Gaut BS.

Genome Res. 2009 Aug;19(8):1419-28. Epub 2009 May 28.PMID: 19478138 [PubMed - indexed for MEDLINE]Related articlesFree article

TranspoGene and microTranspoGene: transposed elements influence on the transcriptome of seven vertebrates and invertebrates.

Levy A, Sela N, Ast G.

Nucleic Acids Res. 2008 Jan;36(Database issue):D47-52. Epub 2007 Nov 5.PMID: 17986453 [PubMed - indexed for MEDLINE]Related articlesFree article

Large-scale analysis of exonized mammalian-wide interspersed repeats in primate genomes.

Lin L, Jiang P, Shen S, Sato S, Davidson BL, Xing Y.

Hum Mol Genet. 2009 Jun 15;18(12):2204-14. Epub 2009 Mar 26.PMID: 19324900 [PubMed - indexed for MEDLINE]Related articles

Dual coding of siRNAs and miRNAs by plant transposable elements.

Piriyapongsa J, Jordan IK.

RNA. 2008 May;14(5):814-21. Epub 2008 Mar 26.PMID: 18367716 [PubMed - indexed for MEDLINE]Related articlesFree article

Dynamics and differential proliferation of transposable elements during the evolution of the B and A genomes of wheat.

Charles M, Belcram H, Just J, Huneau C, Viollet A, Couloux A, Segurens B, Carter M, Huteau V, Coriton O, Appels R, Samain S, Chalhoub B.

Genetics. 2008 Oct;180(2):1071-86. Epub 2008 Sep 9.PMID: 18780739 [PubMed - indexed for MEDLINE]Related articlesFree article

A genome-wide view of miniature inverted-repeat transposable elements (MITEs) in rice, Oryza sativa ssp. japonica.

Oki N, Yano K, Okumoto Y, Tsukiyama T, Teraishi M, Tanisaka T.

Genes Genet Syst. 2008 Aug;83(4):321-9.PMID: 18931457 [PubMed - indexed for MEDLINE]Related articlesFree article

Evolution and consequences of transposable elements.

McDonald JF.

Curr Opin Genet Dev. 1993 Dec;3(6):855-64. Review.PMID: 8118210 [PubMed - indexed for MEDLINE]Related articles

Sectorial mutagenesis by transposable elements.

Jurka J, Kapitonov VV.

Genetica. 1999;107(1-3):239-48.PMID: 10952215 [PubMed - indexed for MEDLINE]Related articles

Evaluating the protein coding potential of exonized transposable element sequences.

Piriyapongsa J, Rutledge MT, Patel S, Borodovsky M, Jordan IK.

Biol Direct. 2007 Nov 26;2:31.PMID: 18036258 [PubMed - indexed for MEDLINE]Related articlesFree article

Transposable elements as sources of variation in animals and plants.

Kidwell MG, Lisch D.

Proc Natl Acad Sci U S A. 1997 Jul 22;94(15):7704-11.PMID: 9223252 [PubMed - indexed for MEDLINE]Related articlesFree article

Codon usage by transposable elements and their host genes in five species.

Lerat E, Capy P, Biémont C.

J Mol Evol. 2002 May;54(5):625-37.PMID: 11965435 [PubMed - indexed for MEDLINE]Related articles