PubMed

ParaHaplo: A program package for haplotype-based whole-genome association study using parallel computing.

Misawa K, Kamatani N.

Source Code Biol Med. 2009 Oct 21;4:7.PMID: 19845960 [PubMed - in process]Free PMC ArticleFree textRelated citations

ParaHaplo 2.0: a program package for haplotype-estimation and haplotype-based whole-genome association study using parallel computing.

Misawa K, Kamatani N.

Source Code Biol Med. 2010 Jun 4;5:5.PMID: 20525312 [PubMed - in process]Free PMC ArticleFree textRelated citations

Parallel and serial computing tools for testing single-locus and epistatic SNP effects of quantitative traits in genome-wide association studies.

Ma L, Runesha HB, Dvorkin D, Garbe JR, Da Y.

BMC Bioinformatics. 2008 Jul 21;9:315.PMID: 18644146 [PubMed - indexed for MEDLINE]Free PMC ArticleFree textRelated citations

PRESTO: rapid calculation of order statistic distributions and multiple-testing adjusted P-values via permutation for one and two-stage genetic association studies.

Browning BL.

BMC Bioinformatics. 2008 Jul 13;9:309.PMID: 18620604 [PubMed - indexed for MEDLINE]Free PMC ArticleFree textRelated citations

SNPinfo: integrating GWAS and candidate gene information into functional SNP selection for genetic association studies.

Xu Z, Taylor JA.

Nucleic Acids Res. 2009 Jul 1;37(Web Server issue):W600-5. Epub 2009 May 5.PMID: 19417063 [PubMed - indexed for MEDLINE]Free PMC ArticleFree textRelated citations

A fast method for computing high-significance disease association in large population-based studies.

Kimmel G, Shamir R.

Am J Hum Genet. 2006 Sep;79(3):481-92. Epub 2006 Jul 24.PMID: 16909386 [PubMed - indexed for MEDLINE]Free PMC ArticleFree textRelated citations

ExactFDR: exact computation of false discovery rate estimate in case-control association studies.

Wojcik J, Forner K.

Bioinformatics. 2008 Oct 15;24(20):2407-8. Epub 2008 Jul 28.PMID: 18662924 [PubMed - indexed for MEDLINE]Free ArticleRelated citations

Gains in power for exhaustive analyses of haplotypes using variable-sized sliding window strategy: a comparison of association-mapping strategies.

Guo Y, Li J, Bonham AJ, Wang Y, Deng H.

Eur J Hum Genet. 2009 Jun;17(6):785-92. Epub 2008 Dec 17.PMID: 19092774 [PubMed - indexed for MEDLINE]Free PMC ArticleFree textRelated citations

Genome-wide association studies using single-nucleotide polymorphisms versus haplotypes: an empirical comparison with data from the North American Rheumatoid Arthritis Consortium.

Shim H, Chun H, Engelman CD, Payseur BA.

BMC Proc. 2009 Dec 15;3 Suppl 7:S35.PMID: 20018026 [PubMed - in process]Free PMC ArticleFree textRelated citations

PERMORY: an LD-exploiting permutation test algorithm for powerful genome-wide association testing.

Pahl R, Schäfer H.

Bioinformatics. 2010 Jul 6. [Epub ahead of print]PMID: 20605926 [PubMed - as supplied by publisher]Related citations

PGA: power calculator for case-control genetic association analyses.

Menashe I, Rosenberg PS, Chen BE.

BMC Genet. 2008 May 13;9:36.PMID: 18477402 [PubMed - indexed for MEDLINE]Free PMC ArticleFree textRelated citations

Genome-wide association reveals three SNPs associated with sporadic amyotrophic lateral sclerosis through a two-locus analysis.

Sha Q, Zhang Z, Schymick JC, Traynor BJ, Zhang S.

BMC Med Genet. 2009 Sep 9;10:86.PMID: 19740415 [PubMed - indexed for MEDLINE]Free PMC ArticleFree textRelated citations

Association testing by haplotype-sharing methods applicable to whole-genome analysis.

Nolte IM, de Vries AR, Spijker GT, Jansen RC, Brinza D, Zelikovsky A, Te Meerman GJ.

BMC Proc. 2007;1 Suppl 1:S129. Epub 2007 Dec 18.PMID: 18466471 [PubMed]Free PMC ArticleFree textRelated citations

So Many Correlated Tests, So Little Time! Rapid Adjustment of P Values for Multiple Correlated Tests.

Conneely KN, Boehnke M.

Am J Hum Genet. 2007 Oct 26;81(6). [Epub ahead of print]PMID: 17966093 [PubMed - as supplied by publisher]Related citations

LocusZoom: Regional visualization of genome-wide association scan results.

Pruim RJ, Welch RP, Sanna S, Teslovich TM, Chines PS, Gliedt TP, Boehnke M, Abecasis GR, Willer CJ.

Bioinformatics. 2010 Jul 15. [Epub ahead of print]PMID: 20634204 [PubMed - as supplied by publisher]Free ArticleRelated citations

SNP selection and multidimensional scaling to quantify population structure.

Miclaus K, Wolfinger R, Czika W.

Genet Epidemiol. 2009 Sep;33(6):488-96.PMID: 19194989 [PubMed - indexed for MEDLINE]Related citations

LD2SNPing: linkage disequilibrium plotter and RFLP enzyme mining for tag SNPs.

Chang HW, Chuang LY, Chang YJ, Cheng YH, Hung YC, Chen HC, Yang CH.

BMC Genet. 2009 Jun 6;10:26.PMID: 19500380 [PubMed - indexed for MEDLINE]Free PMC ArticleFree textRelated citations

Linked region detection using high-density SNP genotype data via the minimum recombinant model of pedigree haplotype inference.

Wang L, Wang Z, Yang W.

BMC Bioinformatics. 2009 Jul 15;10:216.PMID: 19604391 [PubMed - indexed for MEDLINE]Free PMC ArticleFree textRelated citations

FastEpistasis: a high performance computing solution for quantitative trait epistasis.

Schüpbach T, Xenarios I, Bergmann S, Kapur K.

Bioinformatics. 2010 Jun 1;26(11):1468-9. Epub 2010 Apr 7.PMID: 20375113 [PubMed - in process]Free PMC ArticleFree textRelated citations

FastMap: fast eQTL mapping in homozygous populations.

Gatti DM, Shabalin AA, Lam TC, Wright FA, Rusyn I, Nobel AB.

Bioinformatics. 2009 Feb 15;25(4):482-9. Epub 2008 Dec 17.PMID: 19091771 [PubMed - indexed for MEDLINE]Free PMC ArticleFree textRelated citations