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    Results: 1 to 20 of 114

    1.

    Targeted next-generation sequencing of a cancer transcriptome enhances detection of sequence variants and novel fusion transcripts.

    Levin JZ, Berger MF, Adiconis X, Rogov P, Melnikov A, Fennell T, Nusbaum C, Garraway LA, Gnirke A.

    Genome Biol. 2009;10(10):R115. Epub 2009 Oct 16.

    PMID:
    19835606
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    2.

    Chimeric transcript discovery by paired-end transcriptome sequencing.

    Maher CA, Palanisamy N, Brenner JC, Cao X, Kalyana-Sundaram S, Luo S, Khrebtukova I, Barrette TR, Grasso C, Yu J, Lonigro RJ, Schroth G, Kumar-Sinha C, Chinnaiyan AM.

    Proc Natl Acad Sci U S A. 2009 Jul 28;106(30):12353-8. Epub 2009 Jul 10.

    PMID:
    19592507
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    3.

    In-depth cDNA library sequencing provides quantitative gene expression profiling in cancer biomarker discovery.

    Yang W, Ying D, Lau YL.

    Genomics Proteomics Bioinformatics. 2009 Jun;7(1-2):1-12.

    PMID:
    19591787
    [PubMed - indexed for MEDLINE]
    4.

    Next-generation tag sequencing for cancer gene expression profiling.

    Morrissy AS, Morin RD, Delaney A, Zeng T, McDonald H, Jones S, Zhao Y, Hirst M, Marra MA.

    Genome Res. 2009 Oct;19(10):1825-35. Epub 2009 Jun 18.

    PMID:
    19541910
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    5.

    Analysis of the prostate cancer cell line LNCaP transcriptome using a sequencing-by-synthesis approach.

    Bainbridge MN, Warren RL, Hirst M, Romanuik T, Zeng T, Go A, Delaney A, Griffith M, Hickenbotham M, Magrini V, Mardis ER, Sadar MD, Siddiqui AS, Marra MA, Jones SJ.

    BMC Genomics. 2006 Sep 29;7:246.

    PMID:
    17010196
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    6.

    Transcriptome sequencing to detect gene fusions in cancer.

    Maher CA, Kumar-Sinha C, Cao X, Kalyana-Sundaram S, Han B, Jing X, Sam L, Barrette T, Palanisamy N, Chinnaiyan AM.

    Nature. 2009 Mar 5;458(7234):97-101. Epub 2009 Jan 11.

    PMID:
    19136943
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    7.

    A transcriptional sketch of a primary human breast cancer by 454 deep sequencing.

    Guffanti A, Iacono M, Pelucchi P, Kim N, Soldà G, Croft LJ, Taft RJ, Rizzi E, Askarian-Amiri M, Bonnal RJ, Callari M, Mignone F, Pesole G, Bertalot G, Bernardi LR, Albertini A, Lee C, Mattick JS, Zucchi I, De Bellis G.

    BMC Genomics. 2009 Apr 20;10:163.

    PMID:
    19379481
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    8.

    A comparison of single molecule and amplification based sequencing of cancer transcriptomes.

    Sam LT, Lipson D, Raz T, Cao X, Thompson J, Milos PM, Robinson D, Chinnaiyan AM, Kumar-Sinha C, Maher CA.

    PLoS One. 2011 Mar 1;6(3):e17305.

    PMID:
    21390249
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    9.

    Genome-wide analysis of allelic expression imbalance in human primary cells by high-throughput transcriptome resequencing.

    Heap GA, Yang JH, Downes K, Healy BC, Hunt KA, Bockett N, Franke L, Dubois PC, Mein CA, Dobson RJ, Albert TJ, Rodesch MJ, Clayton DG, Todd JA, van Heel DA, Plagnol V.

    Hum Mol Genet. 2010 Jan 1;19(1):122-34. Epub .

    PMID:
    19825846
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    10.

    Targeted next-generation sequencing detects point mutations, insertions, deletions and balanced chromosomal rearrangements as well as identifies novel leukemia-specific fusion genes in a single procedure.

    Grossmann V, Kohlmann A, Klein HU, Schindela S, Schnittger S, Dicker F, Dugas M, Kern W, Haferlach T, Haferlach C.

    Leukemia. 2011 Apr;25(4):671-80. Epub 2011 Jan 21.

    PMID:
    21252984
    [PubMed - indexed for MEDLINE]
    11.

    Identification of sequence variants in genetic disease-causing genes using targeted next-generation sequencing.

    Wei X, Ju X, Yi X, Zhu Q, Qu N, Liu T, Chen Y, Jiang H, Yang G, Zhen R, Lan Z, Qi M, Wang J, Yang Y, Chu Y, Li X, Guang Y, Huang J.

    PLoS One. 2011;6(12):e29500. Epub 2011 Dec 21.

    PMID:
    22216297
    [PubMed - in process]
    Free PMC Article
    12.

    Next-generation transcriptome assembly.

    Martin JA, Wang Z.

    Nat Rev Genet. 2011 Sep 7;12(10):671-82. doi: 10.1038/nrg3068. Review.

    PMID:
    21897427
    [PubMed - indexed for MEDLINE]
    13.

    Ribosomal footprints on a transcriptome landscape.

    Morris DR.

    Genome Biol. 2009;10(4):215. Epub 2009 Apr 28. Review.

    PMID:
    19439030
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    14.

    Discovery of novel human transcript variants by analysis of intronic single-block EST with polyadenylation site.

    Wang P, Yu P, Gao P, Shi T, Ma D.

    BMC Genomics. 2009 Nov 12;10:518.

    PMID:
    19906316
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    15.

    Comparison of next generation sequencing technologies for transcriptome characterization.

    Wall PK, Leebens-Mack J, Chanderbali AS, Barakat A, Wolcott E, Liang H, Landherr L, Tomsho LP, Hu Y, Carlson JE, Ma H, Schuster SC, Soltis DE, Soltis PS, Altman N, dePamphilis CW.

    BMC Genomics. 2009 Aug 1;10:347.

    PMID:
    19646272
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    16.

    Discovery of differentially expressed genes in human breast cancer using subtracted cDNA libraries and cDNA microarrays.

    Jiang Y, Harlocker SL, Molesh DA, Dillon DC, Stolk JA, Houghton RL, Repasky EA, Badaro R, Reed SG, Xu J.

    Oncogene. 2002 Mar 28;21(14):2270-82.

    PMID:
    11948410
    [PubMed - indexed for MEDLINE]
    Free Article
    17.

    Generation of a large catalog of unique transcripts for whole-genome expression analysis in nonmodel species.

    Bellin D, Ferrarini A, Delledonne M.

    Methods Mol Biol. 2011;729:257-69.

    PMID:
    21365496
    [PubMed - indexed for MEDLINE]
    18.

    RNA sequencing and quantitation using the Helicos Genetic Analysis System.

    Raz T, Causey M, Jones DR, Kieu A, Letovsky S, Lipson D, Thayer E, Thompson JF, Milos PM.

    Methods Mol Biol. 2011;733:37-49.

    PMID:
    21431761
    [PubMed - indexed for MEDLINE]
    19.

    deFuse: an algorithm for gene fusion discovery in tumor RNA-Seq data.

    McPherson A, Hormozdiari F, Zayed A, Giuliany R, Ha G, Sun MG, Griffith M, Heravi Moussavi A, Senz J, Melnyk N, Pacheco M, Marra MA, Hirst M, Nielsen TO, Sahinalp SC, Huntsman D, Shah SP.

    PLoS Comput Biol. 2011 May;7(5):e1001138. Epub 2011 May 19.

    PMID:
    21625565
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    20.

    Combining next-generation pyrosequencing with microarray for large scale expression analysis in non-model species.

    Bellin D, Ferrarini A, Chimento A, Kaiser O, Levenkova N, Bouffard P, Delledonne M.

    BMC Genomics. 2009 Nov 24;10:555.

    PMID:
    19930683
    [PubMed - indexed for MEDLINE]
    Free PMC Article

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