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    Results: 1 to 20 of 95

    2.

    Genome-wide analysis of protein-DNA interactions.

    Kim TH, Ren B.

    Annu Rev Genomics Hum Genet. 2006;7:81-102. Review.

    PMID:
    16722805
    [PubMed - indexed for MEDLINE]
    3.

    Nuclear receptor location analyses in mammalian genomes: from gene regulation to regulatory networks.

    Deblois G, Giguère V.

    Mol Endocrinol. 2008 Sep;22(9):1999-2011. Epub 2008 Feb 21. Review.

    PMID:
    18292239
    [PubMed - indexed for MEDLINE]
    Free Article
    4.

    Constructing transcriptional regulatory networks.

    Blais A, Dynlacht BD.

    Genes Dev. 2005 Jul 1;19(13):1499-511. Review.

    PMID:
    15998805
    [PubMed - indexed for MEDLINE]
    Free Article
    5.

    Advances in analysis of transcriptional regulatory networks.

    Kim TM, Park PJ.

    Wiley Interdiscip Rev Syst Biol Med. 2011 Jan-Feb;3(1):21-35. Review.

    PMID:
    21069662
    [PubMed - indexed for MEDLINE]
    6.

    Genome-wide distribution of DNA methylation at single-nucleotide resolution.

    Wong E, Wei CL.

    Prog Mol Biol Transl Sci. 2011;101:459-77. Review.

    PMID:
    21507362
    [PubMed - indexed for MEDLINE]
    7.

    Multiplex parallel pair-end-ditag sequencing approaches in system biology.

    Ruan Y, Wei CL.

    Wiley Interdiscip Rev Syst Biol Med. 2010 Mar-Apr;2(2):224-34. Review.

    PMID:
    20836024
    [PubMed - indexed for MEDLINE]
    8.

    Chromatin architecture and the regulation of nuclear receptor inducible transcription.

    Biddie SC.

    J Neuroendocrinol. 2011 Jan;23(1):94-106. doi: 10.1111/j.1365-2826.2010.02079.x.

    PMID:
    21039975
    [PubMed - indexed for MEDLINE]
    9.

    Chromatin interaction networks and higher order architectures of eukaryotic genomes.

    Singh Sandhu K, Li G, Sung WK, Ruan Y.

    J Cell Biochem. 2011 Sep;112(9):2218-21. doi: 10.1002/jcb.23155.

    PMID:
    21520242
    [PubMed - indexed for MEDLINE]
    10.

    CTCF-mediated functional chromatin interactome in pluripotent cells.

    Handoko L, Xu H, Li G, Ngan CY, Chew E, Schnapp M, Lee CW, Ye C, Ping JL, Mulawadi F, Wong E, Sheng J, Zhang Y, Poh T, Chan CS, Kunarso G, Shahab A, Bourque G, Cacheux-Rataboul V, Sung WK, Ruan Y, Wei CL.

    Nat Genet. 2011 Jun 19;43(7):630-8. doi: 10.1038/ng.857. Erratum in: Nat Genet. 2011 Aug;43(8):815.

    PMID:
    21685913
    [PubMed - indexed for MEDLINE]
    11.

    Toxicology and genetic toxicology in the new era of "toxicogenomics": impact of "-omics" technologies.

    Aardema MJ, MacGregor JT.

    Mutat Res. 2002 Jan 29;499(1):13-25. Review.

    PMID:
    11804602
    [PubMed - indexed for MEDLINE]
    12.

    Tackling the epigenome in the pluripotent stem cells.

    Zhao X, Ruan Y, Wei CL.

    J Genet Genomics. 2008 Jul;35(7):403-12. Review.

    PMID:
    18640620
    [PubMed - indexed for MEDLINE]
    13.

    Protein kinase target discovery from genome-wide messenger RNA expression profiling.

    Ma'ayan A, He JC.

    Mt Sinai J Med. 2010 Jul-Aug;77(4):345-9.

    PMID:
    20687179
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    14.

    ChIP-based methods for the identification of long-range chromatin interactions.

    Fullwood MJ, Ruan Y.

    J Cell Biochem. 2009 May 1;107(1):30-9. Review.

    PMID:
    19247990
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    15.

    Chromatin profiling, DamID and the emerging landscape of gene expression.

    Orian A.

    Curr Opin Genet Dev. 2006 Apr;16(2):157-64. Epub 2006 Feb 28. Review.

    PMID:
    16503134
    [PubMed - indexed for MEDLINE]
    16.

    Dissecting long-range transcriptional mechanisms by chromatin immunoprecipitation.

    Johnson KD, Bresnick EH.

    Methods. 2002 Jan;26(1):27-36. Review.

    PMID:
    12054902
    [PubMed - indexed for MEDLINE]
    17.

    Genome-wide location analysis: insights on transcriptional regulation.

    Hawkins RD, Ren B.

    Hum Mol Genet. 2006 Apr 15;15 Spec No 1:R1-7. Review.

    PMID:
    16651365
    [PubMed - indexed for MEDLINE]
    Free Article
    18.

    RB gene family: genome-wide ChIP approaches could open undiscovered roads.

    Rizzolio F, Esposito L, Muresu D, Fratamico R, Jaraha R, Caprioli GV, Giordano A.

    J Cell Biochem. 2010 Apr 1;109(5):839-43. Review.

    PMID:
    20052675
    [PubMed - indexed for MEDLINE]
    19.

    Using ChIP-based technologies to identify epigenetic modifications in disease-relevant cells.

    Falk J.

    IDrugs. 2010 Mar;13(3):169-74. Review.

    PMID:
    20191433
    [PubMed - indexed for MEDLINE]
    20.

    Genome-wide maps of transcription regulatory elements.

    Sakabe NJ, Nobrega MA.

    Wiley Interdiscip Rev Syst Biol Med. 2010 Jul-Aug;2(4):422-37. Review.

    PMID:
    20836039
    [PubMed - indexed for MEDLINE]

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