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    Results: 1 to 20 of 144

    1.

    De novo genome sequence assembly of a filamentous fungus using Sanger, 454 and Illumina sequence data.

    Diguistini S, Liao NY, Platt D, Robertson G, Seidel M, Chan SK, Docking TR, Birol I, Holt RA, Hirst M, Mardis E, Marra MA, Hamelin RC, Bohlmann J, Breuil C, Jones SJ.

    Genome Biol. 2009;10(9):R94. Epub 2009 Sep 11.

    PMID:
    19747388
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    2.

    De novo assembly of a 40 Mb eukaryotic genome from short sequence reads: Sordaria macrospora, a model organism for fungal morphogenesis.

    Nowrousian M, Stajich JE, Chu M, Engh I, Espagne E, Halliday K, Kamerewerd J, Kempken F, Knab B, Kuo HC, Osiewacz HD, Pöggeler S, Read ND, Seiler S, Smith KM, Zickler D, Kück U, Freitag M.

    PLoS Genet. 2010 Apr 8;6(4):e1000891.

    PMID:
    20386741
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    3.

    Assessing the feasibility of GS FLX Pyrosequencing for sequencing the Atlantic salmon genome.

    Quinn NL, Levenkova N, Chow W, Bouffard P, Boroevich KA, Knight JR, Jarvie TP, Lubieniecki KP, Desany BA, Koop BF, Harkins TT, Davidson WS.

    BMC Genomics. 2008 Aug 28;9:404.

    PMID:
    18755037
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    4.

    A biologist's guide to de novo genome assembly using next-generation sequence data: A test with fungal genomes.

    Haridas S, Breuill C, Bohlmann J, Hsiang T.

    J Microbiol Methods. 2011 Sep;86(3):368-75. Epub 2011 Jul 3.

    PMID:
    21749903
    [PubMed - indexed for MEDLINE]
    5.

    De novo assembly of short sequence reads.

    Paszkiewicz K, Studholme DJ.

    Brief Bioinform. 2010 Sep;11(5):457-72. Epub 2010 Aug 19. Review.

    PMID:
    20724458
    [PubMed - indexed for MEDLINE]
    6.

    High-quality draft assemblies of mammalian genomes from massively parallel sequence data.

    Gnerre S, Maccallum I, Przybylski D, Ribeiro FJ, Burton JN, Walker BJ, Sharpe T, Hall G, Shea TP, Sykes S, Berlin AM, Aird D, Costello M, Daza R, Williams L, Nicol R, Gnirke A, Nusbaum C, Lander ES, Jaffe DB.

    Proc Natl Acad Sci U S A. 2011 Jan 25;108(4):1513-8. Epub 2010 Dec 27.

    PMID:
    21187386
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    7.

    SHARCGS, a fast and highly accurate short-read assembly algorithm for de novo genomic sequencing.

    Dohm JC, Lottaz C, Borodina T, Himmelbauer H.

    Genome Res. 2007 Nov;17(11):1697-706. Epub 2007 Oct 1.

    PMID:
    17908823
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    8.

    High quality draft sequences for prokaryotic genomes using a mix of new sequencing technologies.

    Aury JM, Cruaud C, Barbe V, Rogier O, Mangenot S, Samson G, Poulain J, Anthouard V, Scarpelli C, Artiguenave F, Wincker P.

    BMC Genomics. 2008 Dec 16;9:603.

    PMID:
    19087275
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    9.

    Improving de novo sequence assembly using machine learning and comparative genomics for overlap correction.

    Palmer LE, Dejori M, Bolanos R, Fasulo D.

    BMC Bioinformatics. 2010 Jan 15;11:33.

    PMID:
    20078885
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    10.

    Improving draft assemblies by iterative mapping and assembly of short reads to eliminate gaps.

    Tsai IJ, Otto TD, Berriman M.

    Genome Biol. 2010;11(4):R41. Epub 2010 Apr 13.

    PMID:
    20388197
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    11.

    Integrating genome assemblies with MAIA.

    Nijkamp J, Winterbach W, van den Broek M, Daran JM, Reinders M, de Ridder D.

    Bioinformatics. 2010 Sep 15;26(18):i433-9.

    PMID:
    20823304
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    12.

    ALLPATHS: de novo assembly of whole-genome shotgun microreads.

    Butler J, MacCallum I, Kleber M, Shlyakhter IA, Belmonte MK, Lander ES, Nusbaum C, Jaffe DB.

    Genome Res. 2008 May;18(5):810-20. Epub 2008 Mar 13.

    PMID:
    18340039
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    13.

    Dothideomycete plant interactions illuminated by genome sequencing and EST analysis of the wheat pathogen Stagonospora nodorum.

    Hane JK, Lowe RG, Solomon PS, Tan KC, Schoch CL, Spatafora JW, Crous PW, Kodira C, Birren BW, Galagan JE, Torriani SF, McDonald BA, Oliver RP.

    Plant Cell. 2007 Nov;19(11):3347-68. Epub 2007 Nov 16.

    PMID:
    18024570
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    14.

    An ORFome assembly approach to metagenomics sequences analysis.

    Ye Y, Tang H.

    Comput Syst Bioinformatics Conf. 2008;7:3-13.

    PMID:
    19642264
    [PubMed - indexed for MEDLINE]
    Free Article
    15.

    Sequencing and assembly of highly heterozygous genome of Vitis vinifera L. cv Pinot Noir: problems and solutions.

    Zharkikh A, Troggio M, Pruss D, Cestaro A, Eldrdge G, Pindo M, Mitchell JT, Vezzulli S, Bhatnagar S, Fontana P, Viola R, Gutin A, Salamini F, Skolnick M, Velasco R.

    J Biotechnol. 2008 Aug 31;136(1-2):38-43. Epub 2008 May 3.

    PMID:
    18538432
    [PubMed - indexed for MEDLINE]
    16.

    De novo assembly using low-coverage short read sequence data from the rice pathogen Pseudomonas syringae pv. oryzae.

    Reinhardt JA, Baltrus DA, Nishimura MT, Jeck WR, Jones CD, Dangl JL.

    Genome Res. 2009 Feb;19(2):294-305. Epub 2008 Nov 17.

    PMID:
    19015323
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    17.

    Draft genome sequencing of the enigmatic yeast Saitoella complicata.

    Nishida H, Hamamoto M, Sugiyama J.

    J Gen Appl Microbiol. 2011;57(4):243-6. No abstract available.

    PMID:
    21914972
    [PubMed - indexed for MEDLINE]
    Free Article
    18.

    PCR-based gene targeting in the filamentous fungus Ashbya gossypii.

    Wendland J, Ayad-Durieux Y, Knechtle P, Rebischung C, Philippsen P.

    Gene. 2000 Jan 25;242(1-2):381-91.

    PMID:
    10721732
    [PubMed - indexed for MEDLINE]
    19.

    Multiplex sequencing of plant chloroplast genomes using Solexa sequencing-by-synthesis technology.

    Cronn R, Liston A, Parks M, Gernandt DS, Shen R, Mockler T.

    Nucleic Acids Res. 2008 Nov;36(19):e122. Epub 2008 Aug 27.

    PMID:
    18753151
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    20.

    454 sequencing put to the test using the complex genome of barley.

    Wicker T, Schlagenhauf E, Graner A, Close TJ, Keller B, Stein N.

    BMC Genomics. 2006 Oct 26;7:275.

    PMID:
    17067373
    [PubMed - indexed for MEDLINE]
    Free PMC Article

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