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Genome-wide prioritization of disease genes and identification of disease-disease associations from an integrated human functional linkage network.

Linghu B, Snitkin ES, Hu Z, Xia Y, Delisi C.

Genome Biol. 2009;10(9):R91. Epub 2009 Sep 3.PMID: 19728866 [PubMed - indexed for MEDLINE]Related articlesFree article

Network-based global inference of human disease genes.

Wu X, Jiang R, Zhang MQ, Li S.

Mol Syst Biol. 2008;4:189. Epub 2008 May 6.PMID: 18463613 [PubMed - indexed for MEDLINE]Related articlesFree article

Discovering cancer genes by integrating network and functional properties.

Li L, Zhang K, Lee J, Cordes S, Davis DP, Tang Z.

BMC Med Genomics. 2009 Sep 19;2:61.PMID: 19765316 [PubMed - indexed for MEDLINE]Related articlesFree article

[Genome-wide association study on complex diseases: genetic statistical issues]

Yan WL.

Yi Chuan. 2008 May;30(5):543-9. Review. Chinese. PMID: 18487142 [PubMed - indexed for MEDLINE]Related articles

Comparison of automated candidate gene prediction systems using genes implicated in type 2 diabetes by genome-wide association studies.

Teber ET, Liu JY, Ballouz S, Fatkin D, Wouters MA.

BMC Bioinformatics. 2009 Jan 30;10 Suppl 1:S69.PMID: 19208173 [PubMed - indexed for MEDLINE]Related articlesFree article

Identifying disease-causal genes using Semantic Web-based representation of integrated genomic and phenomic knowledge.

Gudivada RC, Qu XA, Chen J, Jegga AG, Neumann EK, Aronow BJ.

J Biomed Inform. 2008 Oct;41(5):717-29. Epub 2008 Aug 23.PMID: 18755295 [PubMed - indexed for MEDLINE]Related articles

Asthma genetics and genomics 2009.

Weiss ST, Raby BA, Rogers A.

Curr Opin Genet Dev. 2009 Jun;19(3):279-82. Epub 2009 May 28. Review.PMID: 19481925 [PubMed - indexed for MEDLINE]Related articles

Mapping the genetic architecture of gene expression in human liver.

Schadt EE, Molony C, Chudin E, Hao K, Yang X, Lum PY, Kasarskis A, Zhang B, Wang S, Suver C, Zhu J, Millstein J, Sieberts S, Lamb J, GuhaThakurta D, Derry J, Storey JD, Avila-Campillo I, Kruger MJ, Johnson JM, Rohl CA, van Nas A, Mehrabian M, Drake TA, Lusis AJ, Smith RC, Guengerich FP, Strom SC, Schuetz E, Rushmore TH, Ulrich R.

PLoS Biol. 2008 May 6;6(5):e107.PMID: 18462017 [PubMed - indexed for MEDLINE]Related articlesFree article

Genome-wide association studies, field synopses, and the development of the knowledge base on genetic variation and human diseases.

Khoury MJ, Bertram L, Boffetta P, Butterworth AS, Chanock SJ, Dolan SM, Fortier I, Garcia-Closas M, Gwinn M, Higgins JP, Janssens AC, Ostell J, Owen RP, Pagon RA, Rebbeck TR, Rothman N, Bernstein JL, Burton PR, Campbell H, Chockalingam A, Furberg H, Little J, O'Brien TR, Seminara D, Vineis P, Winn DM, Yu W, Ioannidis JP.

Am J Epidemiol. 2009 Aug 1;170(3):269-79. Epub 2009 Jun 4.PMID: 19498075 [PubMed - indexed for MEDLINE]Related articlesFree article

Human gene coexpression landscape: confident network derived from tissue transcriptomic profiles.

Prieto C, Risueño A, Fontanillo C, De las Rivas J.

PLoS One. 2008;3(12):e3911. Epub 2008 Dec 15.PMID: 19081792 [PubMed - indexed for MEDLINE]Related articlesFree article

Statistical Viewer: a tool to upload and integrate linkage and association data as plots displayed within the Ensembl genome browser.

Stenger JE, Xu H, Haynes C, Hauser ER, Pericak-Vance M, Goldschmidt-Clermont PJ, Vance JM.

BMC Bioinformatics. 2005 Apr 12;6:95.PMID: 15826305 [PubMed - indexed for MEDLINE]Related articlesFree article

Genome-wide association scan of quantitative traits for attention deficit hyperactivity disorder identifies novel associations and confirms candidate gene associations.

Lasky-Su J, Neale BM, Franke B, Anney RJ, Zhou K, Maller JB, Vasquez AA, Chen W, Asherson P, Buitelaar J, Banaschewski T, Ebstein R, Gill M, Miranda A, Mulas F, Oades RD, Roeyers H, Rothenberger A, Sergeant J, Sonuga-Barke E, Steinhausen HC, Taylor E, Daly M, Laird N, Lange C, Faraone SV.

Am J Med Genet B Neuropsychiatr Genet. 2008 Dec 5;147B(8):1345-54.PMID: 18821565 [PubMed - indexed for MEDLINE]Related articles

ToppGene Suite for gene list enrichment analysis and candidate gene prioritization.

Chen J, Bardes EE, Aronow BJ, Jegga AG.

Nucleic Acids Res. 2009 Jul 1;37(Web Server issue):W305-11. Epub 2009 May 22.PMID: 19465376 [PubMed - indexed for MEDLINE]Related articlesFree article

Speeding disease gene discovery by sequence based candidate prioritization.

Adie EA, Adams RR, Evans KL, Porteous DJ, Pickard BS.

BMC Bioinformatics. 2005 Mar 14;6:55.PMID: 15766383 [PubMed - indexed for MEDLINE]Related articlesFree article

Gene-network analysis identifies susceptibility genes related to glycobiology in autism.

van der Zwaag B, Franke L, Poot M, Hochstenbach R, Spierenburg HA, Vorstman JA, van Daalen E, de Jonge MV, Verbeek NE, Brilstra EH, van 't Slot R, Ophoff RA, van Es MA, Blauw HM, Veldink JH, Buizer-Voskamp JE, Beemer FA, van den Berg LH, Wijmenga C, van Amstel HK, van Engeland H, Burbach JP, Staal WG.

PLoS One. 2009 May 28;4(5):e5324.PMID: 19492091 [PubMed - indexed for MEDLINE]Related articlesFree article

Prioritization of positional candidate genes using multiple web-based software tools.

Thornblad TA, Elliott KS, Jowett J, Visscher PM.

Twin Res Hum Genet. 2007 Dec;10(6):861-70.PMID: 18179399 [PubMed - indexed for MEDLINE]Related articles

Identifying disease associations via genome-wide association studies.

Huang W, Wang P, Liu Z, Zhang L.

BMC Bioinformatics. 2009 Jan 30;10 Suppl 1:S68.PMID: 19208172 [PubMed - indexed for MEDLINE]Related articlesFree article

Reconstruction of a functional human gene network, with an application for prioritizing positional candidate genes.

Franke L, van Bakel H, Fokkens L, de Jong ED, Egmont-Petersen M, Wijmenga C.

Am J Hum Genet. 2006 Jun;78(6):1011-25. Epub 2006 Apr 25.PMID: 16685651 [PubMed - indexed for MEDLINE]Related articlesFree article

Walking the interactome for prioritization of candidate disease genes.

Köhler S, Bauer S, Horn D, Robinson PN.

Am J Hum Genet. 2008 Apr;82(4):949-58. Epub 2008 Mar 27.PMID: 18371930 [PubMed - indexed for MEDLINE]Related articlesFree article

Population genomics in a disease targeted primary cell model.

Grundberg E, Kwan T, Ge B, Lam KC, Koka V, Kindmark A, Mallmin H, Dias J, Verlaan DJ, Ouimet M, Sinnett D, Rivadeneira F, Estrada K, Hofman A, van Meurs JM, Uitterlinden A, Beaulieu P, Graziani A, Harmsen E, Ljunggren O, Ohlsson C, Mellström D, Karlsson MK, Nilsson O, Pastinen T.

Genome Res. 2009 Nov;19(11):1942-52. Epub 2009 Aug 4.PMID: 19654370 [PubMed - indexed for MEDLINE]Related articles