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    Results: 1 to 20 of 188

    1.

    Synorth: exploring the evolution of synteny and long-range regulatory interactions in vertebrate genomes.

    Dong X, Fredman D, Lenhard B.

    Genome Biol. 2009;10(8):R86. Epub 2009 Aug 21.

    PMID:
    19698106
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    2.

    Comparative genomics of ParaHox clusters of teleost fishes: gene cluster breakup and the retention of gene sets following whole genome duplications.

    Siegel N, Hoegg S, Salzburger W, Braasch I, Meyer A.

    BMC Genomics. 2007 Sep 6;8:312.

    PMID:
    17822543
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    3.

    Genomic regulatory blocks encompass multiple neighboring genes and maintain conserved synteny in vertebrates.

    Kikuta H, Laplante M, Navratilova P, Komisarczuk AZ, Engström PG, Fredman D, Akalin A, Caccamo M, Sealy I, Howe K, Ghislain J, Pezeron G, Mourrain P, Ellingsen S, Oates AC, Thisse C, Thisse B, Foucher I, Adolf B, Geling A, Lenhard B, Becker TS.

    Genome Res. 2007 May;17(5):545-55. Epub 2007 Mar 26.

    PMID:
    17387144
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    4.

    Ancora: a web resource for exploring highly conserved noncoding elements and their association with developmental regulatory genes.

    Engström PG, Fredman D, Lenhard B.

    Genome Biol. 2008;9(2):R34. Epub 2008 Feb 15.

    PMID:
    18279518
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    5.

    Cinteny: flexible analysis and visualization of synteny and genome rearrangements in multiple organisms.

    Sinha AU, Meller J.

    BMC Bioinformatics. 2007 Mar 8;8:82.

    PMID:
    17343765
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    6.

    Highly conserved syntenic blocks at the vertebrate Hox loci and conserved regulatory elements within and outside Hox gene clusters.

    Lee AP, Koh EG, Tay A, Brenner S, Venkatesh B.

    Proc Natl Acad Sci U S A. 2006 May 2;103(18):6994-9. Epub 2006 Apr 24.

    PMID:
    16636282
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    7.

    Retroviral enhancer detection insertions in zebrafish combined with comparative genomics reveal genomic regulatory blocks - a fundamental feature of vertebrate genomes.

    Kikuta H, Fredman D, Rinkwitz S, Lenhard B, Becker TS.

    Genome Biol. 2007;8 Suppl 1:S4. Review.

    PMID:
    18047696
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    9.

    Comparison of Pax1/9 locus reveals 500-Myr-old syntenic block and evolutionary conserved noncoding regions.

    Wang W, Zhong J, Su B, Zhou Y, Wang YQ.

    Mol Biol Evol. 2007 Mar;24(3):784-91. Epub 2006 Dec 20.

    PMID:
    17182894
    [PubMed - indexed for MEDLINE]
    Free Article
    10.

    Comparative genomics and evolution of conserved noncoding elements (CNE) in rainbow trout.

    Moghadam HK, Ferguson MM, Danzmann RG.

    BMC Genomics. 2009 Jun 23;10:278.

    PMID:
    19549339
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    11.

    Genomic regulatory blocks underlie extensive microsynteny conservation in insects.

    Engström PG, Ho Sui SJ, Drivenes O, Becker TS, Lenhard B.

    Genome Res. 2007 Dec;17(12):1898-908. Epub 2007 Nov 7.

    PMID:
    17989259
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    12.

    Evolution of pigment synthesis pathways by gene and genome duplication in fish.

    Braasch I, Schartl M, Volff JN.

    BMC Evol Biol. 2007 May 11;7:74.

    PMID:
    17498288
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    13.

    ECR Browser: a tool for visualizing and accessing data from comparisons of multiple vertebrate genomes.

    Ovcharenko I, Nobrega MA, Loots GG, Stubbs L.

    Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W280-6.

    PMID:
    15215395
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    14.

    CYNTENATOR: progressive gene order alignment of 17 vertebrate genomes.

    Rödelsperger C, Dieterich C.

    PLoS One. 2010 Jan 28;5(1):e8861.

    PMID:
    20126624
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    15.

    OrthoClusterDB: an online platform for synteny blocks.

    Ng MP, Vergara IA, Frech C, Chen Q, Zeng X, Pei J, Chen N.

    BMC Bioinformatics. 2009 Jun 23;10:192.

    PMID:
    19549318
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    16.

    The random versus fragile breakage models of chromosome evolution: a matter of resolution.

    Becker TS, Lenhard B.

    Mol Genet Genomics. 2007 Nov;278(5):487-91. Epub 2007 Sep 13. Review.

    PMID:
    17851692
    [PubMed - indexed for MEDLINE]
    17.

    Genomic regulatory blocks in vertebrates and implications in human disease.

    Navratilova P, Becker TS.

    Brief Funct Genomic Proteomic. 2009 Jul;8(4):333-42. Epub 2009 Jun 26. Review.

    PMID:
    19561171
    [PubMed - indexed for MEDLINE]
    Free Article
    18.

    The evolutionary origin of nodal-related genes in teleosts.

    Fan X, Dougan ST.

    Dev Genes Evol. 2007 Dec;217(11-12):807-13. Epub 2007 Nov 9.

    PMID:
    17992538
    [PubMed - indexed for MEDLINE]
    19.

    Comparative genomics of vertebrate Fox cluster loci.

    Wotton KR, Shimeld SM.

    BMC Genomics. 2006 Oct 24;7:271.

    PMID:
    17062144
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    20.

    Elephant shark sequence reveals unique insights into the evolutionary history of vertebrate genes: A comparative analysis of the protocadherin cluster.

    Yu WP, Rajasegaran V, Yew K, Loh WL, Tay BH, Amemiya CT, Brenner S, Venkatesh B.

    Proc Natl Acad Sci U S A. 2008 Mar 11;105(10):3819-24. Epub 2008 Mar 4.

    PMID:
    18319338
    [PubMed - indexed for MEDLINE]
    Free PMC Article

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