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    Results: 1 to 20 of 342

    1.

    Unique features of HLA-mediated HIV evolution in a Mexican cohort: a comparative study.

    Avila-Rios S, Ormsby CE, Carlson JM, Valenzuela-Ponce H, Blanco-Heredia J, Garrido-Rodriguez D, Garcia-Morales C, Heckerman D, Brumme ZL, Mallal S, John M, Espinosa E, Reyes-Teran G.

    Retrovirology. 2009 Aug 10;6:72.

    PMID:
    19664284
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    2.

    Phylogenetic dependency networks: inferring patterns of CTL escape and codon covariation in HIV-1 Gag.

    Carlson JM, Brumme ZL, Rousseau CM, Brumme CJ, Matthews P, Kadie C, Mullins JI, Walker BD, Harrigan PR, Goulder PJ, Heckerman D.

    PLoS Comput Biol. 2008 Nov;4(11):e1000225. Epub 2008 Nov 21.

    PMID:
    19023406
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    3.

    HLA-associated immune escape pathways in HIV-1 subtype B Gag, Pol and Nef proteins.

    Brumme ZL, John M, Carlson JM, Brumme CJ, Chan D, Brockman MA, Swenson LC, Tao I, Szeto S, Rosato P, Sela J, Kadie CM, Frahm N, Brander C, Haas DW, Riddler SA, Haubrich R, Walker BD, Harrigan PR, Heckerman D, Mallal S.

    PLoS One. 2009 Aug 19;4(8):e6687.

    PMID:
    19690614
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    4.

    Selective pressures of HLA genotypes and antiviral therapy on human immunodeficiency virus type 1 sequence mutation at a population level.

    Ahlenstiel G, Roomp K, Däumer M, Nattermann J, Vogel M, Rockstroh JK, Beerenwinkel N, Kaiser R, Nischalke HD, Sauerbruch T, Lengauer T, Spengler U; Kompetenznetz HIV/AIDS.

    Clin Vaccine Immunol. 2007 Oct;14(10):1266-73. Epub 2007 Aug 22.

    PMID:
    17715334
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    5.

    Evidence of differential HLA class I-mediated viral evolution in functional and accessory/regulatory genes of HIV-1.

    Brumme ZL, Brumme CJ, Heckerman D, Korber BT, Daniels M, Carlson J, Kadie C, Bhattacharya T, Chui C, Szinger J, Mo T, Hogg RS, Montaner JS, Frahm N, Brander C, Walker BD, Harrigan PR.

    PLoS Pathog. 2007 Jul;3(7):e94. Erratum in: PLoS Pathog. 2007 Aug 10;3(8):e121.

    PMID:
    17616974
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    6.

    Evidence of HIV-1 adaptation to HLA-restricted immune responses at a population level.

    Moore CB, John M, James IR, Christiansen FT, Witt CS, Mallal SA.

    Science. 2002 May 24;296(5572):1439-43.

    PMID:
    12029127
    [PubMed - indexed for MEDLINE]
    7.

    Rare HLA drive additional HIV evolution compared to more frequent alleles.

    Rousseau CM, Lockhart DW, Listgarten J, Maley SN, Kadie C, Learn GH, Nickle DC, Heckerman DE, Deng W, Brander C, Ndung'u T, Coovadia H, Goulder PJ, Korber BT, Walker BD, Mullins JI.

    AIDS Res Hum Retroviruses. 2009 Mar;25(3):297-303.

    PMID:
    19327049
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    8.

    Transmission and accumulation of CTL escape variants drive negative associations between HIV polymorphisms and HLA.

    Leslie A, Kavanagh D, Honeyborne I, Pfafferott K, Edwards C, Pillay T, Hilton L, Thobakgale C, Ramduth D, Draenert R, Le Gall S, Luzzi G, Edwards A, Brander C, Sewell AK, Moore S, Mullins J, Moore C, Mallal S, Bhardwaj N, Yusim K, Phillips R, Klenerman P, Korber B, Kiepiela P, Walker B, Goulder P.

    J Exp Med. 2005 Mar 21;201(6):891-902.

    PMID:
    15781581
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    9.

    Differential evolution of cell-associated virus in blood and genital tract of HIV-infected females undergoing HAART.

    Tirado G, Jove G, Reyes E, Sepulveda G, Yamamura Y, Singh DP, Kumar A.

    Virology. 2005 Apr 10;334(2):299-305.

    PMID:
    15780880
    [PubMed - indexed for MEDLINE]
    10.

    Interactive selective pressures of HLA-restricted immune responses and antiretroviral drugs on HIV-1.

    John M, Moore CB, James IR, Mallal SA.

    Antivir Ther. 2005;10(4):551-5.

    PMID:
    16038481
    [PubMed - indexed for MEDLINE]
    11.

    Marked epitope- and allele-specific differences in rates of mutation in human immunodeficiency type 1 (HIV-1) Gag, Pol, and Nef cytotoxic T-lymphocyte epitopes in acute/early HIV-1 infection.

    Brumme ZL, Brumme CJ, Carlson J, Streeck H, John M, Eichbaum Q, Block BL, Baker B, Kadie C, Markowitz M, Jessen H, Kelleher AD, Rosenberg E, Kaldor J, Yuki Y, Carrington M, Allen TM, Mallal S, Altfeld M, Heckerman D, Walker BD.

    J Virol. 2008 Sep;82(18):9216-27. Epub 2008 Jul 9.

    PMID:
    18614631
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    12.

    Central role of reverting mutations in HLA associations with human immunodeficiency virus set point.

    Matthews PC, Prendergast A, Leslie A, Crawford H, Payne R, Rousseau C, Rolland M, Honeyborne I, Carlson J, Kadie C, Brander C, Bishop K, Mlotshwa N, Mullins JI, Coovadia H, Ndung'u T, Walker BD, Heckerman D, Goulder PJ.

    J Virol. 2008 Sep;82(17):8548-59. Epub 2008 Jul 2.

    PMID:
    18596105
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    13.

    Passive sexual transmission of human immunodeficiency virus type 1 variants and adaptation in new hosts.

    Frater AJ, Edwards CT, McCarthy N, Fox J, Brown H, Milicic A, Mackie N, Pillay T, Drijfhout JW, Dustan S, Clarke JR, Holmes EC, Zhang HT, Pfafferott K, Goulder PJ, McClure MO, Weber J, Phillips RE, Fidler S.

    J Virol. 2006 Jul;80(14):7226-34.

    PMID:
    16809328
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    14.

    HLA class I-driven evolution of human immunodeficiency virus type 1 subtype c proteome: immune escape and viral load.

    Rousseau CM, Daniels MG, Carlson JM, Kadie C, Crawford H, Prendergast A, Matthews P, Payne R, Rolland M, Raugi DN, Maust BS, Learn GH, Nickle DC, Coovadia H, Ndung'u T, Frahm N, Brander C, Walker BD, Goulder PJ, Bhattacharya T, Heckerman DE, Korber BT, Mullins JI.

    J Virol. 2008 Jul;82(13):6434-46. Epub 2008 Apr 23.

    PMID:
    18434400
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    15.

    HLA footprints on human immunodeficiency virus type 1 are associated with interclade polymorphisms and intraclade phylogenetic clustering.

    Matthews PC, Leslie AJ, Katzourakis A, Crawford H, Payne R, Prendergast A, Power K, Kelleher AD, Klenerman P, Carlson J, Heckerman D, Ndung'u T, Walker BD, Allen TM, Pybus OG, Goulder PJ.

    J Virol. 2009 May;83(9):4605-15. Epub 2009 Feb 25. Erratum in: J Virol. 2011 May;85(9):4635.

    PMID:
    19244334
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    16.

    Evidence of HIV-1 adaptation to host HLA alleles following chimp-to-human transmission.

    Ngandu NK, Seoighe C, Scheffler K.

    Virol J. 2009 Oct 10;6:164.

    PMID:
    19818146
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    17.

    HLA-driven convergence of HIV-1 viral subtypes B and F toward the adaptation to immune responses in human populations.

    Dilernia DA, Jones L, Rodriguez S, Turk G, Rubio AE, Pampuro S, Gomez-Carrillo M, Bautista CT, Deluchi G, Benetucci J, Lasala MB, Lourtau L, Losso MH, Perez H, Cahn P, Salomón H.

    PLoS One. 2008;3(10):e3429. Epub 2008 Oct 21. Erratum in: PLoS One. 2008;3(11). doi: 10.1371/annotation/bffe1c6a-4d1e-46bb-a8dc-648a4f566a19. Bautista, Christian [corrected to Bautista, Christian T].

    PMID:
    18941505
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    18.

    Dynamic features of the selective pressure on the human immunodeficiency virus type 1 (HIV-1) gp120 CD4-binding site in a group of long term non progressor (LTNP) subjects.

    Canducci F, Marinozzi MC, Sampaolo M, Berrè S, Bagnarelli P, Degano M, Gallotta G, Mazzi B, Lemey P, Burioni R, Clementi M.

    Retrovirology. 2009 Jan 15;6:4.

    PMID:
    19146663
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    19.

    Clade-specific evolution mediated by HLA-B*57/5801 in human immunodeficiency virus type 1 clade A1 p24.

    McKinnon LR, Capina R, Peters H, Mendoza M, Kimani J, Wachihi C, Kariri A, Kimani M, Richmond M, Kiazyk SK, Fowke KR, Jaoko W, Luo M, Ball TB, Plummer FA.

    J Virol. 2009 Dec;83(23):12636-42. Epub 2009 Sep 16.

    PMID:
    19759140
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    20.

    Investigating signs of recent evolution in the pool of proviral HIV type 1 DNA during years of successful HAART.

    Mens H, Pedersen AG, Jørgensen LB, Hue S, Yang Y, Gerstoft J, Katzenstein TL.

    AIDS Res Hum Retroviruses. 2007 Jan;23(1):107-15.

    PMID:
    17263640
    [PubMed - indexed for MEDLINE]

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