PubMed

Trees in the web of life.

Swithers KS, Gogarten JP, Fournier GP.

J Biol. 2009;8(6):54. Epub 2009 Jul 13. Review.PMID: 19664165 [PubMed - indexed for MEDLINE]Related articlesFree article

Genome trees constructed using five different approaches suggest new major bacterial clades.

Wolf YI, Rogozin IB, Grishin NV, Tatusov RL, Koonin EV.

BMC Evol Biol. 2001 Oct 20;1:8.PMID: 11734060 [PubMed - indexed for MEDLINE]Related articlesFree article

Search for a 'Tree of Life' in the thicket of the phylogenetic forest.

Puigbò P, Wolf YI, Koonin EV.

J Biol. 2009;8(6):59. Epub 2009 Jul 13.PMID: 19594957 [PubMed - indexed for MEDLINE]Related articlesFree article

The net of life: reconstructing the microbial phylogenetic network.

Kunin V, Goldovsky L, Darzentas N, Ouzounis CA.

Genome Res. 2005 Jul;15(7):954-9. Epub 2005 Jun 17.PMID: 15965028 [PubMed - indexed for MEDLINE]Related articlesFree article

Phylogenetics and the cohesion of bacterial genomes.

Daubin V, Moran NA, Ochman H.

Science. 2003 Aug 8;301(5634):829-32.PMID: 12907801 [PubMed - indexed for MEDLINE]Related articlesFree article

Evolution of genes and organisms: the tree/web of life in light of horizontal gene transfer.

Olendzenski L, Gogarten JP.

Ann N Y Acad Sci. 2009 Oct;1178:137-45.PMID: 19845634 [PubMed - indexed for MEDLINE]Related articles

Algorithms for computing parsimonious evolutionary scenarios for genome evolution, the last universal common ancestor and dominance of horizontal gene transfer in the evolution of prokaryotes.

Mirkin BG, Fenner TI, Galperin MY, Koonin EV.

BMC Evol Biol. 2003 Jan 6;3:2. Epub 2003 Jan 6.PMID: 12515582 [PubMed - indexed for MEDLINE]Related articlesFree article

Evolution. Passages found through labyrinth of bacterial evolution.

Pennisi E.

Science. 2003 Aug 8;301(5634):745-6. No abstract available. PMID: 12907766 [PubMed - indexed for MEDLINE]Related articles

Extensive horizontal transfer of core genome genes between two Lactobacillus species found in the gastrointestinal tract.

Nicolas P, Bessières P, Ehrlich SD, Maguin E, van de Guchte M.

BMC Evol Biol. 2007 Aug 20;7:141.PMID: 17708761 [PubMed - indexed for MEDLINE]Related articlesFree article

Genomics of bacteria and archaea: the emerging dynamic view of the prokaryotic world.

Koonin EV, Wolf YI.

Nucleic Acids Res. 2008 Dec;36(21):6688-719. Epub 2008 Oct 23. Review.PMID: 18948295 [PubMed - indexed for MEDLINE]Related articlesFree article

Does a tree-like phylogeny only exist at the tips in the prokaryotes?

Creevey CJ, Fitzpatrick DA, Philip GK, Kinsella RJ, O'Connell MJ, Pentony MM, Travers SA, Wilkinson M, McInerney JO.

Proc Biol Sci. 2004 Dec 22;271(1557):2551-8.PMID: 15615680 [PubMed - indexed for MEDLINE]Related articlesFree article

From gene trees to organismal phylogeny in prokaryotes: the case of the gamma-Proteobacteria.

Lerat E, Daubin V, Moran NA.

PLoS Biol. 2003 Oct;1(1):E19. Epub 2003 Sep 15.PMID: 12975657 [PubMed - indexed for MEDLINE]Related articlesFree article

Genome trees and the tree of life.

Wolf YI, Rogozin IB, Grishin NV, Koonin EV.

Trends Genet. 2002 Sep;18(9):472-9. Review.PMID: 12175808 [PubMed - indexed for MEDLINE]Related articles

Evolution of mosaic operons by horizontal gene transfer and gene displacement in situ.

Omelchenko MV, Makarova KS, Wolf YI, Rogozin IB, Koonin EV.

Genome Biol. 2003;4(9):R55. Epub 2003 Aug 29.PMID: 12952534 [PubMed - indexed for MEDLINE]Related articlesFree article

Horizontal gene transfer regulation in bacteria as a "spandrel" of DNA repair mechanisms.

Fall S, Mercier A, Bertolla F, Calteau A, Gueguen L, Perrière G, Vogel TM, Simonet P.

PLoS One. 2007 Oct 24;2(10):e1055.PMID: 17957239 [PubMed - indexed for MEDLINE]Related articlesFree article

Patterns of bacterial gene movement.

Hao W, Golding GB.

Mol Biol Evol. 2004 Jul;21(7):1294-307. Epub 2004 Apr 28.PMID: 15115802 [PubMed - indexed for MEDLINE]Related articlesFree article

The molecular evolution of catalatic hydroperoxidases: evidence for multiple lateral transfer of genes between prokaryota and from bacteria into eukaryota.

Klotz MG, Loewen PC.

Mol Biol Evol. 2003 Jul;20(7):1098-112. Epub 2003 May 30.PMID: 12777528 [PubMed - indexed for MEDLINE]Related articlesFree article

Organisation of the S10, spc and alpha ribosomal protein gene clusters in prokaryotic genomes.

Coenye T, Vandamme P.

FEMS Microbiol Lett. 2005 Jan 1;242(1):117-26.PMID: 15621428 [PubMed - indexed for MEDLINE]Related articles

Decoding the genomic tree of life.

Simonson AB, Servin JA, Skophammer RG, Herbold CW, Rivera MC, Lake JA.

Proc Natl Acad Sci U S A. 2005 May 3;102 Suppl 1:6608-13. Epub 2005 Apr 25.PMID: 15851667 [PubMed - indexed for MEDLINE]Related articlesFree article

Examining bacterial species under the specter of gene transfer and exchange.

Ochman H, Lerat E, Daubin V.

Proc Natl Acad Sci U S A. 2005 May 3;102 Suppl 1:6595-9. Epub 2005 Apr 25. Review.PMID: 15851673 [PubMed - indexed for MEDLINE]Related articlesFree article