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    Results: 1 to 20 of 175

    1.

    Developmental roles of 21 Drosophila transcription factors are determined by quantitative differences in binding to an overlapping set of thousands of genomic regions.

    MacArthur S, Li XY, Li J, Brown JB, Chu HC, Zeng L, Grondona BP, Hechmer A, Simirenko L, Keränen SV, Knowles DW, Stapleton M, Bickel P, Biggin MD, Eisen MB.

    Genome Biol. 2009;10(7):R80. Epub 2009 Jul 23.

    PMID:
    19627575
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    2.

    Transcription factors bind thousands of active and inactive regions in the Drosophila blastoderm.

    Li XY, MacArthur S, Bourgon R, Nix D, Pollard DA, Iyer VN, Hechmer A, Simirenko L, Stapleton M, Luengo Hendriks CL, Chu HC, Ogawa N, Inwood W, Sementchenko V, Beaton A, Weiszmann R, Celniker SE, Knowles DW, Gingeras T, Speed TP, Eisen MB, Biggin MD.

    PLoS Biol. 2008 Feb;6(2):e27.

    PMID:
    18271625
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    3.

    Computational identification of developmental enhancers: conservation and function of transcription factor binding-site clusters in Drosophila melanogaster and Drosophila pseudoobscura.

    Berman BP, Pfeiffer BD, Laverty TR, Salzberg SL, Rubin GM, Eisen MB, Celniker SE.

    Genome Biol. 2004;5(9):R61. Epub 2004 Aug 20.

    PMID:
    15345045
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    4.

    Computational identification of Ftz/Ftz-F1 downstream target genes.

    Bowler T, Kosman D, Licht JD, Pick L.

    Dev Biol. 2006 Nov 1;299(1):78-90. Epub 2006 Jul 12.

    PMID:
    16996052
    [PubMed - indexed for MEDLINE]
    5.

    Quantitative models of the mechanisms that control genome-wide patterns of transcription factor binding during early Drosophila development.

    Kaplan T, Li XY, Sabo PJ, Thomas S, Stamatoyannopoulos JA, Biggin MD, Eisen MB.

    PLoS Genet. 2011 Feb 3;7(2):e1001290.

    PMID:
    21304941
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    6.

    Exploiting transcription factor binding site clustering to identify cis-regulatory modules involved in pattern formation in the Drosophila genome.

    Berman BP, Nibu Y, Pfeiffer BD, Tomancak P, Celniker SE, Levine M, Rubin GM, Eisen MB.

    Proc Natl Acad Sci U S A. 2002 Jan 22;99(2):757-62.

    PMID:
    11805330
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    7.

    Computational detection of genomic cis-regulatory modules applied to body patterning in the early Drosophila embryo.

    Rajewsky N, Vergassola M, Gaul U, Siggia ED.

    BMC Bioinformatics. 2002 Oct 24;3:30. Epub 2002 Oct 24.

    PMID:
    12398796
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    8.

    Functional analysis of eve stripe 2 enhancer evolution in Drosophila: rules governing conservation and change.

    Ludwig MZ, Patel NH, Kreitman M.

    Development. 1998 Mar;125(5):949-58.

    PMID:
    9449677
    [PubMed - indexed for MEDLINE]
    Free Article
    9.

    Spatial bistability generates hunchback expression sharpness in the Drosophila embryo.

    Lopes FJ, Vieira FM, Holloway DM, Bisch PM, Spirov AV.

    PLoS Comput Biol. 2008 Sep 26;4(9):e1000184.

    PMID:
    18818726
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    10.

    Sepsid even-skipped enhancers are functionally conserved in Drosophila despite lack of sequence conservation.

    Hare EE, Peterson BK, Iyer VN, Meier R, Eisen MB.

    PLoS Genet. 2008 Jun 27;4(6):e1000106.

    PMID:
    18584029
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    11.

    The zinc-finger protein Zelda is a key activator of the early zygotic genome in Drosophila.

    Liang HL, Nien CY, Liu HY, Metzstein MM, Kirov N, Rushlow C.

    Nature. 2008 Nov 20;456(7220):400-3. Epub 2008 Oct 19.

    PMID:
    18931655
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    12.

    Quantitative analysis of binding motifs mediating diverse spatial readouts of the Dorsal gradient in the Drosophila embryo.

    Papatsenko D, Levine M.

    Proc Natl Acad Sci U S A. 2005 Apr 5;102(14):4966-71. Epub 2005 Mar 28.

    PMID:
    15795372
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    13.

    Hox repression of a target gene: extradenticle-independent, additive action through multiple monomer binding sites.

    Galant R, Walsh CM, Carroll SB.

    Development. 2002 Jul;129(13):3115-26.

    PMID:
    12070087
    [PubMed - indexed for MEDLINE]
    Free Article
    14.

    Functional evolution of cis-regulatory modules at a homeotic gene in Drosophila.

    Ho MC, Johnsen H, Goetz SE, Schiller BJ, Bae E, Tran DA, Shur AS, Allen JM, Rau C, Bender W, Fisher WW, Celniker SE, Drewell RA.

    PLoS Genet. 2009 Nov;5(11):e1000709. Epub 2009 Nov 6.

    PMID:
    19893611
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    15.

    Bicoid occurrence and Bicoid-dependent hunchback regulation in lower cyclorrhaphan flies.

    Lemke S, Stauber M, Shaw PJ, Rafiqi AM, Prell A, Schmidt-Ott U.

    Evol Dev. 2008 Jul-Aug;10(4):413-20.

    PMID:
    18638318
    [PubMed - indexed for MEDLINE]
    16.

    Genome-wide analysis of the binding of the Hox protein Ultrabithorax and the Hox cofactor Homothorax in Drosophila.

    Choo SW, White R, Russell S.

    PLoS One. 2011 Apr 5;6(4):e14778.

    PMID:
    21483667
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    17.
    18.

    Hairless is a cofactor for Runt-dependent transcriptional regulation.

    Walrad PB, Hang S, Gergen JP.

    Mol Biol Cell. 2011 Apr 15;22(8):1364-74. Epub 2011 Feb 16.

    PMID:
    21325629
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    19.

    Regulatory and coding regions of the segmentation gene hunchback are functionally conserved between Drosophila virilis and Drosophila melanogaster.

    Lukowitz W, Schröder C, Glaser G, Hülskamp M, Tautz D.

    Mech Dev. 1994 Feb;45(2):105-15.

    PMID:
    8199047
    [PubMed - indexed for MEDLINE]
    20.

    Association of cohesin and Nipped-B with transcriptionally active regions of the Drosophila melanogaster genome.

    Misulovin Z, Schwartz YB, Li XY, Kahn TG, Gause M, MacArthur S, Fay JC, Eisen MB, Pirrotta V, Biggin MD, Dorsett D.

    Chromosoma. 2008 Feb;117(1):89-102. Epub 2007 Oct 27.

    PMID:
    17965872
    [PubMed - indexed for MEDLINE]
    Free PMC Article

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